Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1599 ATGATGTCGAGTGTGCAGGCTAGAATCGGGAGAGAACGGCAACGGTATAAGGATCATCTCAGGCTTGTTGCAGGGTGCATTCCCTTTAAGTTTGAGAAAATTGTTGATGGTCACACACGCAATCCAGAGAGTAGGTTGCTTGTCCTCATGATTTCTTCACCAAATCGCCATGACCTTGTGTTTCCTAAGGGTGGATGGGAGAATGATGAGACTGTTGAACAAGCTGCATGTCGTGAAGCATTGGAGGAAGCAGGAGTGAGAGGAATACTTGGTGAAAATCATCTAGGAGAATGGGAATTTAGAAGCAAGAGCAAACAGAATAACTGCAGCCTGGAAGGAGGTTGCAGAGGTTACATGTTTGCACTGCAGGTGACTGAAGAGCTTGAGTCCTGGCCAGAGCAGGCATTACATGATAGAAAATGGCTTACTCCCAAGGACGCGTTTAAACTCTGCCGATATGATTGGATGAGGGAGGCTCTTAAAAATTTTTTGACCTCTCTCCCAGAGGACAAAAAGAACGAAATGAGGGAAGAGTTGGTGGAGTTTTCTATGATGCCAGTTCCAGATGCTGCAAAAGAGCGTTCAATTTTATCCTCTGGCCGGTTTGGGAAGACCTCAGTTATGCAACGTCTTGAAGGGTCTTATAATAAAGTAACTGTGCAGGCTTGA 669 0.4544 MMSSVQARIGRERQRYKDHLRLVAGCIPFKFEKIVDGHTRNPESRLLVLMISSPNRHDLVFPKGGWENDETVEQAACREALEEAGVRGILGENHLGEWEFRSKSKQNNCSLEGGCRGYMFALQVTEELESWPEQALHDRKWLTPKDAFKLCRYDWMREALKNFLTSLPEDKKNEMREELVEFSMMPVPDAAKERSILSSGRFGKTSVMQRLEGSYNKVTVQA* 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1599 222 SUPERFAMILY Nudix 13 165 IPR015797 -
Vvi1g1599 222 Gene3D Nucleoside Triphosphate Pyrophosphohydrolase 5 167 - -
Vvi1g1599 222 Pfam NUDIX domain 41 163 IPR000086 -
Vvi1g1599 222 FunFam Nudix hydrolase 13 mitochondrial 5 166 - -
Vvi1g1599 222 CDD Nudix_Hydrolase_9 22 157 IPR047198 GO:0016462
Vvi1g1599 222 ProSitePatterns Nudix box signature. 64 85 IPR020084 GO:0016787
Vvi1g1599 222 ProSiteProfiles Nudix hydrolase domain profile. 19 164 IPR000086 -
Vvi1g1599 222 PANTHER DIPHOSPHOINOSITOL POLYPHOSPHATE PHOSPHOHYDROLASE 7 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1599 Vvi-Chr1 22725177 22728397 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1599 K07766 - vvi:100243843 456.832