Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1597 ATGCCATCAAGGATGTTGCTAAGCTGTGATCCACATGATAATGAAGCTGGCTTGATGCTTTTGGAAGACTTGACCACAAATGCAAATCAAGTACAATTGGAGGTGTTGGAGGAGATACTAACACAAAATGCAAATACAGAATATCTGAGGGGCTATCTCGATGGCCACTCTGATAAGGGACTTTTCAAGAAGAAAGTTCCTATTGTTAATTATGAAGACATCAAGCCTCATATCGAGCGAATTGCCAATGGAGAGCCATCAAGAATCATTTCAGCTCAACCCATCACTGAGCTCCTCACAAGCTCAGGAACTTCAGGGGGGCAGCCAAAGTTGATGCCTTCAACTGCTGAGGACTTGGACAGAAAGACATTCTTTTATAACCTCCTTATACCTGTGATGAACAAGTATGTTGATGGCTTGGACCAAGGAAAAGGAATGTACCTGTTGTTTATCAAGCCAGAAATCAGTACCCCTTCTGGCCTGATGGCAAGACCAGTCCTCACCAGTTACTATAAGAGCAGTAACTTCAGAAACCGGCCTTTCAACCCATTTAATGTTTACACAAGCCCTGATGAGACCATTTTGTGTTTGGACAGCAAGCAGAGCATGTACTGCCAATTGCTCTGCGGTTTAGTACAGCGGGATGAGGTGTTAAGGGTTGGTGCAGTTTTCGCATCTGCTTTCCTGCGGGCAATCAAATTCTTAGAGGATCATTGGAGGGAATTATGCTCTAACATAAGAACAGGTTGTGTCAGTGACTGGATCACAGACCCCAGTTGCAGAAATGCCGTGTCTTCATTTCTTAGCAAACCCCAACCTGATCTAGCAGATTTCATTGAGTTCGAGTGTAATGGGGAATCATGGGAAGGGATAATTAAGAGACTTTGGCCTAGAACAAAATACATAGAGGTCATAGTTACAGGGTCTATGGCCCAATATATCCCAACCCTCGAATTTTACAGTGGTGGGCTCCCTTTGGTTTCAACAATGTATGCTTCTTCTGAATGTTACTATGGGATCAATCTTAAACCATTAAGCAAGCCTTCTGATGTCTCTTACACTCTCCTCCCAAACATGGCCTACTTCGAGTTCCTCCCTGTGCAGAAAAACAATGGGGAAGTGACTCAACAAGTCCAATGCAATGGTGGTTGCATAAAAAAGGAGGGCGAAAGGGTGGAAATAGAAGTTGTCGGTCTTGTAGATGTGAAGGTCGGTCACTATTATGAACTGGTTGTGACAACTTTTACAGGGCTTTATAGGTACAGAACTGGAGATATACTCATGGTGACTGGTTTCTACAACAATGCTCCTCAGTTTCGGTTTGTGCAAAGGAGGAATGTGGTTTTAAGCATTGACACTGATAAAACCAATGAAGAAGACCTCCTGAAAGCAGTGACACAAGCAAAGCTCCTGCTTGAGCCGTATGGCTTCCTTCTGACAGAATACACTAGCTATGCTGATACTTCTTCAATCCCTGGTCATTATGTACTGTTTTGGGAGCTCAAAACAAGAGGAAACAATGATTTATCCGAACCTGATCATACTATCATGGAGCAATGCTGCTCCACAGTGGAAGAATCACTGGATTCTGTTTATAGGAGGTGCAGGAGAAGGGACAATTCCATTGGACCACTGGAGATTAGGATAGTGAAGCCTGGCACATTCGACGCCCTCATGGACTTTTGTGTCTCTCAGGGTTCTTCTGTAAACCAATACAAAACACCCAGGTGCATCAAATCCAAAGAGGCCATTAAGATTTTGGACTCAAGGGTGGTGGGAAAAGTTTTCAGTAAAAAGGTTCCTTTCTGGGAGCCTTTCAAAATGGAAACAAAATGA 1836 0.4346 MPSRMLLSCDPHDNEAGLMLLEDLTTNANQVQLEVLEEILTQNANTEYLRGYLDGHSDKGLFKKKVPIVNYEDIKPHIERIANGEPSRIISAQPITELLTSSGTSGGQPKLMPSTAEDLDRKTFFYNLLIPVMNKYVDGLDQGKGMYLLFIKPEISTPSGLMARPVLTSYYKSSNFRNRPFNPFNVYTSPDETILCLDSKQSMYCQLLCGLVQRDEVLRVGAVFASAFLRAIKFLEDHWRELCSNIRTGCVSDWITDPSCRNAVSSFLSKPQPDLADFIEFECNGESWEGIIKRLWPRTKYIEVIVTGSMAQYIPTLEFYSGGLPLVSTMYASSECYYGINLKPLSKPSDVSYTLLPNMAYFEFLPVQKNNGEVTQQVQCNGGCIKKEGERVEIEVVGLVDVKVGHYYELVVTTFTGLYRYRTGDILMVTGFYNNAPQFRFVQRRNVVLSIDTDKTNEEDLLKAVTQAKLLLEPYGFLLTEYTSYADTSSIPGHYVLFWELKTRGNNDLSEPDHTIMEQCCSTVEESLDSVYRRCRRRDNSIGPLEIRIVKPGTFDALMDFCVSQGSSVNQYKTPRCIKSKEAIKILDSRVVGKVFSKKVPFWEPFKMETK* 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1597 611 PANTHER GH3 DOMAIN-CONTAINING PROTEIN 15 600 IPR004993 -
Vvi1g1597 611 Pfam GH3 auxin-responsive promoter 21 582 IPR004993 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1597 Vvi-Chr1 22706570 22709028 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1597 5 597 EF-hand Containing Proteins AT1G23160 54.424 0.0 661
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1597 K14487 - vvi:100248869 1235.32