Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1592 ATGGCTGCCAGAGAAATCAAGTCACCTGAAGTCCAGCCTGAGACACCTGCTAGTTTGGGTGGGAATTCAGAGTCATTTAGAAGGAAGAAACTGGGCATCTATTTCCTTGAGTCGGATGATAGGCGAACGGCTTTTGGAGGTGGATATGTTGGAGGAACTACACCGGTTAACATTCATGGGAAGCCTATACCGGATCTGTCAAAGACTGGCGGTTGGGTTGCTGCCTTCTTCATTTTTGGGAATGAAATGGCAGAGAGAATGGCTTATTTCGGTCTTTCAGTTAACATGGTGGCCTTTATGTTCTATGTCATGCATCGGCCTTTTTCCAGTTCAGCAAATGCAGTGAACAATTTCCTGGGGATATCACAGGCATCCTCTGTTCTTGGTGGTTTTCTCGCTGATGCATACCTGGGTCGATATTGGACAATAGCAATTTTCACAACAATCTATCTTGCAGGTCTGACAGGAATAACATTATGTGCAACAATGAACATCTTCGTGCCCAACCAAGACCAGTGTGATCAGTTCTCCCTACTTCTGGGCAGTTGTGAGCCTGCAAAACCATGGCAGATGTTTTACCTCTATACAGTCCTTTATGTGACTGGCTTTGGAGCTGCCGGTATTAGACCCTGTGTTTCCTCCTTCGGGGCTGATCAGTTTGATGAAAGAAGTAGAGACTACAAGACCCACCTGGATAGGTTTTTCAATTTCTTTTACCTCTCTGTCACCATTGGGGCAATTGTGGCCTTCACTGCAGTGGTCTACATTCAGATCAAGCGTGGATGGGGATCTGCCTTTGGTTCATTGGCCATAGCTATGGGCATATCAAACCTGGTCTTCTTTATTGGCACTCCATTGTATAGGCACAGGTTGCCAGGAGGCAGCCCTCTGACACGAGTCGCCCAAGTTCTGGTTGCTGCCTTTCGGAAGAGAAATGTCTCATTTTCCAGCGGCGAGTATGTAGGCCTTTATGAGCTTCCAGGCAAACAATCTGCGATAAAGGGTAGCCGAAAGATAGTTCACACTGATGATTTCAGATGTTTGGACAAAGCAGCTTTGCAACTCAAGGAAGATGGTGCTGCTCCAAGTCCTTGGAGGCTTTGTACAGTGACCCAAGTAGAAGAAGTGAAGATCCTTGTGAAACTACTTCCTATTCCAGCTTGCACAATAATACTGAGTTTGATCTTAACTGAGTTTCTGACTCTCTCAGTACAGCAGGCTTATACATTGAACACCCACATTGGCCGTCTGAAACTCCCCGTCACATGCATGCCTGTCTTTCCTGGGCTGAGCATATTTCTTATACTGTCTCTCTATTACTCCATATTCGTCCCCATCTCCCGACGCATCACAGGCCATCCTCATGGTGCTTCTCAGCTTCAGAGGGTAGGCATTGGTCTAGCAGTCTCAATCCTATCTGTAGCCTGGGCTGGTGTCTTTGAGAGGTACAGAAGGAACTATGCAATCAAACAGGGCTATGAATTTACTTTTCTAACACCCATGCCCCACCTAAGTGCATACTGGTTACTGATCCAGTACTGCCTCATCGGCATAGCCGAAGTGTTCTGCATTGTGGGGTTACTCGAATTCCTGTATGAGGAGGCCCCCGATGCCATGAGGAGTATAGGATCTGCTTACGCTGCGGTGGCTGGTGGCTTAGGTTGCTTTGGAGCCACTATATTGAACAGCATCATCAAATCAATCACGGGCGACCGACAGCAGATGCACCCATCTTGGCTTTCCCAGAACATAAACACCGGTAGATTCGATTATTTGTATTGGCTTCTCACAGTTTTTAGTGTGATCAATTTCTGCATATTTCTATACTCAGCACAAAGGTACAAGTACAGGGTAGCGCAGGAAGGCACAATGGAGGAAGAAGCTGTAAGCAAGAAAGCGAGTACCCCATCAGTGGAAAGTTAA 1923 0.4665 MAAREIKSPEVQPETPASLGGNSESFRRKKLGIYFLESDDRRTAFGGGYVGGTTPVNIHGKPIPDLSKTGGWVAAFFIFGNEMAERMAYFGLSVNMVAFMFYVMHRPFSSSANAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMNIFVPNQDQCDQFSLLLGSCEPAKPWQMFYLYTVLYVTGFGAAGIRPCVSSFGADQFDERSRDYKTHLDRFFNFFYLSVTIGAIVAFTAVVYIQIKRGWGSAFGSLAIAMGISNLVFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRNVSFSSGEYVGLYELPGKQSAIKGSRKIVHTDDFRCLDKAALQLKEDGAAPSPWRLCTVTQVEEVKILVKLLPIPACTIILSLILTEFLTLSVQQAYTLNTHIGRLKLPVTCMPVFPGLSIFLILSLYYSIFVPISRRITGHPHGASQLQRVGIGLAVSILSVAWAGVFERYRRNYAIKQGYEFTFLTPMPHLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMRSIGSAYAAVAGGLGCFGATILNSIIKSITGDRQQMHPSWLSQNINTGRFDYLYWLLTVFSVINFCIFLYSAQRYKYRVAQEGTMEEEAVSKKASTPSVES* 641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1592 640 Pfam POT family 140 571 IPR000109 GO:0016020|GO:0022857|GO:0055085
Vvi1g1592 640 Gene3D MFS general substrate transporter like domains 52 622 IPR036259 -
Vvi1g1592 640 SUPERFAMILY MFS general substrate transporter 65 617 IPR036259 -
Vvi1g1592 640 ProSitePatterns PTR2 family proton/oligopeptide symporters signature 1. 129 153 IPR018456 GO:0006857|GO:0016020|GO:0022857
Vvi1g1592 640 MobiDBLite consensus disorder prediction 1 23 - -
Vvi1g1592 640 CDD MFS_NPF 75 613 - -
Vvi1g1592 640 PANTHER OLIGOPEPTIDE TRANSPORTER-RELATED 69 616 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1592 Vvi-Chr1 22671239 22673752 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1592 1 629 Organic Solute Cotransporters AT5G13400 78.378 0.0 1036
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1592 - - vvi:100259213 1277.31