Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1588 ATGGATGTAGACAACAAGTTCTTCAATGTGGCCCTCCTCATTGTGGCTACAGTGGTAGTGGCCAAGCTAATCTCTGCGCTTCTGATTCCTAAATCTAGAAAGCGCCTTCCTCCTACCGTTAAGGCATTTCCAGTGATCGGTGGACTTCTCCGGTTCTTGAAAGGCCCGGTGGTGATGCTCCGAGAAGAGTATCCGAAGCTTGGGAGTGTGTTCACCCTGAATCTGTTGAATAAGAACATCACTTTCTTCATTGGACCGGAGGTCTCAGCGCACTTCTTCAAGGCGCCAGAGGCTGATCTCAGTCAGCAAGAGGTTTACCAGTTCAACGTTCCCACTTTTGGCCCCGGAGTTGTTTTCGATGTTGATTATTCGGTGAGGCAAGAGCAGTTCCGGTTCTTTACAGAGTCTCTGAGAGTAACCAAATTGAAGGGATACGTGGATCAGATGGTAACGGAAACCGAAGATTACTTCTCGAAGTGGGGAGATAGTGGTGAAGTGGACCTTAAATACGAGCTAGAGCATTTAATCATCTTAACAGCCAGTAGATGCCTCTTGGGTCAAGAAGTTCGTGATAAGCTATTCGCTGATGTGTCTGCCCTCTTCCATGACCTTGATAACGGCATGCTCCCTATCAGCGTTATCTTCCCATACCTGCCCATCCCAGCCCACCGCCGCCGCGACCAGGCCCGCACGAAGCTTGCTCACATATTTGCAAACATTATTGCTTCCCGTAGAGAGACTGGCAAGTCAGAGAATGACATGTTACAGTGCTTTATGGACTCCAAATACAAAGATGGTCGCCAAACAACCGAAGCTGAGGTCACTGGCCTGCTCATTGCTGCTTTGTTCGCTGGGCAGCATACCAGTTCCATCACTTCCACATGGACCGGTGCATATCTCTTCCGTCACAAGGAATTCCTTTCTGCTGTGTTGGATGAGCAGAAGAACCTGATGAAAAAACATGGGAACAAGGTTGATCACGATATCTTGTCTGAGATGGACGTCTTGTACCGATGCATCAAGGAAGCCCTGAGACTCCACCCTCCCCTGATAATGCTGCTACGTAGCTCACACAGTGATTTCAGTGTGACAACCAAGGATGGGAAAGAATACGACATTCCAAAGGGCCACATTGTTGCCACATCCCCAGCATTTGCCAATCGGCTCCCGCATATCTACAAGGACCCAGAGAGGTATGATCCCGACAGATTTGCAGTTGGGAGAGAAGAAGACAAGGTAGCAGGGGCATTCTCATATATATCTTTTGGAGGTGGCCGGCATGGGTGTCTAGGGGAACCCTTTGCATATCTGCAAATAAAGGCAATATGGAGCCATCTGCTGAGGAATTTTGAGTTTGAACTGATATCACCTTTTCCCGAGATCGACTGGAATGCCATGGTTGTGGGGGTGAAGGGAAAGGTCATGGTGAGGTACAAGCGCCGAGTACTTCCTGTTGACTAA 1461 0.488 MDVDNKFFNVALLIVATVVVAKLISALLIPKSRKRLPPTVKAFPVIGGLLRFLKGPVVMLREEYPKLGSVFTLNLLNKNITFFIGPEVSAHFFKAPEADLSQQEVYQFNVPTFGPGVVFDVDYSVRQEQFRFFTESLRVTKLKGYVDQMVTETEDYFSKWGDSGEVDLKYELEHLIILTASRCLLGQEVRDKLFADVSALFHDLDNGMLPISVIFPYLPIPAHRRRDQARTKLAHIFANIIASRRETGKSENDMLQCFMDSKYKDGRQTTEAEVTGLLIAALFAGQHTSSITSTWTGAYLFRHKEFLSAVLDEQKNLMKKHGNKVDHDILSEMDVLYRCIKEALRLHPPLIMLLRSSHSDFSVTTKDGKEYDIPKGHIVATSPAFANRLPHIYKDPERYDPDRFAVGREEDKVAGAFSYISFGGGRHGCLGEPFAYLQIKAIWSHLLRNFEFELISPFPEIDWNAMVVGVKGKVMVRYKRRVLPVD* 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1588 486 FunFam Cytochrome p450 51g1 33 485 - -
Vvi1g1588 486 PRINTS P450 superfamily signature 284 301 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi1g1588 486 PRINTS P450 superfamily signature 420 429 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi1g1588 486 PRINTS P450 superfamily signature 338 349 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi1g1588 486 PRINTS P450 superfamily signature 429 440 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi1g1588 486 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 422 431 IPR017972 GO:0005506|GO:0016705
Vvi1g1588 486 SUPERFAMILY Cytochrome P450 32 481 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi1g1588 486 CDD CYP51-like 64 464 - -
Vvi1g1588 486 Gene3D Cytochrome P450 32 483 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi1g1588 486 PANTHER CYTOCHROME P450 FAMILY 7 14 481 - -
Vvi1g1588 486 PRINTS E-class P450 group IV signature 413 429 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi1g1588 486 PRINTS E-class P450 group IV signature 429 447 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi1g1588 486 PRINTS E-class P450 group IV signature 333 349 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi1g1588 486 PRINTS E-class P450 group IV signature 58 81 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi1g1588 486 PRINTS E-class P450 group IV signature 371 385 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi1g1588 486 PRINTS E-class P450 group IV signature 387 405 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi1g1588 486 PRINTS E-class P450 group IV signature 275 301 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi1g1588 486 Pfam Cytochrome P450 37 456 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1588 Vvi-Chr1 22640625 22643804 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1588 1 483 Miscellaneous Gene Families AT1G11680 81.856 0.0 844
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1588 K05917 - vvi:100242104 964.526