Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1584 ATGGAGGTGGAGGCAAATGGGTTGCAAGATAGCTTGGAAAGCAATGAAATAGAGAAAAGAAAAGTGGGTCTCATGAGAGCTCGTGTGGAAAGTGCAGATCCCTCTTCCAAGGACTTGGACGATTTTATGATCCGGCGATTCCTGCGAGCTCGTGATCTAGACATTGATAAGGCTTCTGCCTTATTGCTGAAGTACCTGGGCTGGAGGCGGGCTTTTATGCCTAATGGTTACATATCTGCATCAGAGATTCCAAATGAACTTGCTCAGAACAAGTTGTTTATGCAAGGTCAAGACAAGAAGGGACGCCCCATAACAGTCGTCTATGGTGCCAGACATAAACCCTACAAAGGGAACCTAGAGGAGTTCAAGCGTTTTGTTGTCTACAGTCTTGAAAAAATCTGTGCCAGTATGCCAGGAGGAGAGGAAAAGTTTATCTCCATTGCTGACATTGAAGGATGGGGATACACTAACAGTGACATTCGCGCATACCTTGCAGCTCTATCGATCTTGCAGGATTGTTACCCAGAGAGGCTGGGCAAGCTGTTTCTAGTCCATGTACCTTATGTATTTATGACTGCATGGAAGGTTGTCTACCCATTTATTGACAGTAAAACCAAAAAGAAGATAATCTTTGTCGAGAACAAAAATATCAAGTCGACTCTGCTCGGTGATATTGATGAGAACCAGCTCCCAGATGTATATGGAGGCAAGCTGCCTTTAGTTCCTATCCAAGATAGCTAA 741 0.4426 MEVEANGLQDSLESNEIEKRKVGLMRARVESADPSSKDLDDFMIRRFLRARDLDIDKASALLLKYLGWRRAFMPNGYISASEIPNELAQNKLFMQGQDKKGRPITVVYGARHKPYKGNLEEFKRFVVYSLEKICASMPGGEEKFISIADIEGWGYTNSDIRAYLAALSILQDCYPERLGKLFLVHVPYVFMTAWKVVYPFIDSKTKKKIIFVENKNIKSTLLGDIDENQLPDVYGGKLPLVPIQDS* 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1584 246 Gene3D - 11 244 IPR036865 -
Vvi1g1584 246 PRINTS Cellular retinaldehyde-binding protein signature 194 213 - -
Vvi1g1584 246 PRINTS Cellular retinaldehyde-binding protein signature 43 65 - -
Vvi1g1584 246 PRINTS Cellular retinaldehyde-binding protein signature 161 182 - -
Vvi1g1584 246 SMART sec14_4 86 239 IPR001251 -
Vvi1g1584 246 Pfam CRAL/TRIO domain 90 236 IPR001251 -
Vvi1g1584 246 SUPERFAMILY CRAL/TRIO domain 82 239 IPR036865 -
Vvi1g1584 246 PANTHER OS03G0850700 PROTEIN 10 245 - -
Vvi1g1584 246 CDD SEC14 93 237 IPR001251 -
Vvi1g1584 246 SMART CRAL_TRIO_N_2 40 65 IPR011074 -
Vvi1g1584 246 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 80 242 IPR001251 -
Vvi1g1584 246 SUPERFAMILY CRAL/TRIO N-terminal domain 14 77 IPR036273 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1584 Vvi-Chr1 22609492 22613488 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1584 46 231 Acyl Lipid Metabolism Gene Families AT1G55840 25.962 3.50e-12 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1584 - - vvi:100252364 494.582