Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1583 ATGTTGAGAGTAGCAGGGAGGAGGCTCTCCTCTCTTTCACGCTGGTCGCCGTCGTCCGCTCCGGCGAGCTCAGCCCTTCTCTCCAGAATCCACTCATCCAATGGCGGTGATGGCTCCTCCAGATCCATCTCCTCTCCTCATCTCTTTAATTCCGAATTTCGAGATCTAATTAGAGGATTTTCTTCCGAGTCCCTTGCTCCAAGCCATGACTTGGGTATGATCTCAGACCTCCCACCTACTGTGGCAGCTCTGAAGAATCCCACTTCGAAAATTGTGTATGATGATCACAACCATGAGCGATTTCCCCCTGGCGACCCCAGCAAGCGTGCATTTGCCTACTTTGTATTGACTGGTGGGAGGTTTATTTATGCCTCATTGATCCGTCTCCTGGTGCTTAAGTTTGTTCTGAGCATGTCTGCTAGCAAAGATGTTCTTGCACTTGCCTCTATCGAGGTTGATCTCTCCAGCATTGAGCCTGGGAGCACTGTTACTGTCAAGTGGCGAGGGAAGCCAGTATTCATTAGGCGTCGGACTGAAGATGACATCAAGTTGGCTAATAGTGTTGATGTTGGGTCCCTTCGTGATCCACAGGAGGATGCAGTCAGGGTCAAGGACCCGGAATGGCTCATTGTTATTGGGGTCTGCACCCACTTGGGCTGCATCCCCTTGCCAAATGCTGGTGATTTTGGTGGTTGGTTTTGTCCATGCCATGGCTCCCACTACGATGTCTCTGGCAGGATCCGCAAAGGGCCAGCACCCTACAATCTTGAGGTACCCACTTACAGCTTCTTGGAGGAGAACAAGTTAATGATTGGCTGA 819 0.5092 MLRVAGRRLSSLSRWSPSSAPASSALLSRIHSSNGGDGSSRSISSPHLFNSEFRDLIRGFSSESLAPSHDLGMISDLPPTVAALKNPTSKIVYDDHNHERFPPGDPSKRAFAYFVLTGGRFIYASLIRLLVLKFVLSMSASKDVLALASIEVDLSSIEPGSTVTVKWRGKPVFIRRRTEDDIKLANSVDVGSLRDPQEDAVRVKDPEWLIVIGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDVSGRIRKGPAPYNLEVPTYSFLEENKLMIG* 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1583 272 Pfam Ubiquinol cytochrome reductase transmembrane region 105 143 IPR004192 GO:0008121
Vvi1g1583 272 Pfam Rieske [2Fe-2S] domain 156 258 IPR017941 GO:0051537
Vvi1g1583 272 CDD Rieske_cytochrome_bc1 149 272 - -
Vvi1g1583 272 PRINTS Rieske 2Fe-2S subunit signature 232 244 IPR005805 GO:0016020|GO:0051537
Vvi1g1583 272 PRINTS Rieske 2Fe-2S subunit signature 244 256 IPR005805 GO:0016020|GO:0051537
Vvi1g1583 272 PRINTS Rieske 2Fe-2S subunit signature 210 221 IPR005805 GO:0016020|GO:0051537
Vvi1g1583 272 MobiDBLite consensus disorder prediction 1 20 - -
Vvi1g1583 272 SUPERFAMILY ISP transmembrane anchor 89 145 - -
Vvi1g1583 272 SUPERFAMILY ISP domain 134 271 IPR036922 GO:0051537
Vvi1g1583 272 Gene3D - 141 272 IPR036922 GO:0051537
Vvi1g1583 272 ProSiteProfiles Rieske [2Fe-2S] iron-sulfur domain profile. 182 270 IPR017941 GO:0051537
Vvi1g1583 272 NCBIfam ubiquinol-cytochrome c reductase iron-sulfur subunit 129 272 IPR006317 GO:0008121
Vvi1g1583 272 FunFam Cytochrome b-c1 complex subunit Rieske, mitochondrial 142 272 - -
Vvi1g1583 272 PANTHER CYTOCHROME B-C1 COMPLEX SUBUNIT RIESKE, MITOCHONDRIAL 79 272 IPR014349 GO:0051537
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1583 Vvi-Chr1 22603254 22607524 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1583 K00411 - vvi:100257494 521.931