Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1582 ATGCGTTTCTTCTATCCTGTCATATCTCCATCAAATCTCCGCTTCCTCTCCCGCTGCCGCCTGTTTAATGCGTCATCACCCAAACCTCAGGAGTCAGCGGCAACCCACGTCCTCCGACGTAACGTGCTGTCAATGAACGTCGCAGTCAACAGAGAGGCCTTCCGACAGGCCGTCGCCAACACTCTCGAGCGCCGACTCTTCTACATTCCTTCTTTCAAGATCTACCGCGGCGTCGCTGGACTTTACGACTACGGACCGCCGGGATGCGCCGTCAAGGCCAACGTCCTCGCTTTCTGGCGTCAGCATTTTGTTCTTGAGGAGAACATGTTGGAAGTTGACTGCCCTTGTGTAACGCCTGAAGTTGTTCTGAAGGCTTCAGGGCATGTTGATAAATTTACCGACCTTATGGTTAAGGATGAGAAAACTGGAACATGTTACCGAGCTGATCATTTGGTCAAGGATTTCTGTAATGAGAAGCTTCAGAATGACAATACCATGACTGCAGATAAGGCTGCAGAACTGAGACACATGCTTGCAGTGTTGGATGATCTCTCTGCTGAGGAGCTTGGTGCAAGGATCAAGGAGTATGGCATTACTGCACCTGAAACAAAGAGCCCGCTCTCCGATCCTTATCCTTTCAACTTAATGTTTCAAACATCAATAGGCCCTTCTGGCTTGATCCCTGGGTATATGCGCCCTGAAACAGCTCAAGGAATATTTGTAAATTTTAAGGACTTGTACTATTATAATGGCAGCAAGCTTCCCTTTGCTGCAGCTCAAATCGGTCAGGCTTTCAGAAATGAGATATCTCCCCGCCAAGGCCTTTTGAGAGTTCGCGAGTTCACATTGGCAGAGATTGAGTACTTTGTTGATCCTGAAGACAAATCTCACCCCAAATATTCTGAAGTTGCGGATTTGGAATTCTTGATGTTCCCGAGGGAGGAGCAGACATCTGGACAGTCAACAAGGACAATCCAACTTGGTGAAGCTGTTTCAACGGGAATTGTCAACAATGAGACACTTGCCTACTTCATTGGGAGAGTATACCTATTCCTAACACGTCTTGGCATAGACAAGGACAGGTTACGTTTCAGACAGCACCTTGCAAAGGAAATGGCCCACTATGCTGCAGATTGTTGGGATGCTGAGATTGAGTGTTCTTATGGTTGGATTGAGTGTGTTGGTATTGCGGATAGATCTGCCTATGATTTGCGTGCTCATTCAGAAAAAAGTGGTGTTGATCTTGTGGCTCATGAAAAATTCTCAGAACCTAGAGAAGTGGAGAAATTGGTTATAGCTACAGTAAAGAAGGAACTGGGTCTTGCTTTCAGGGGTAATCAAAAGATGGTGGTTGAAGCTTTGGAGGCAATGGATGAAAAAGAAGCTTTGGAAATGAAGGCCACTTTGGAGTCCAAAGGAGAGGCAGAGTTCAATGTCTGCACACTTGGAAAAAATGTAACTATTAAGAAGAACATGGTCACAATTTCAAAGGAGAAAAAGAAAGAACACCAGAGGGTTTTCACCCCTTCAGTAATAGAGCCATCTTTTGGTATTGGGCGGATAATTTATTGTCTCTTTGAGCAGTGTTTCTACACAAGACCAAGCAAAGCTGGGGATGAACAGTTAAATGTGTTCGCTTTCCCCCCTCTTGTGGCACCTATCAAATGCTCAGTTTTCCCATTAATTCAGGACAAAAAGTACGATGCAGTTGCCAAACTCATTTCCAAGTCATTGACTGTTGCCGGTATCTCACATAAGATTGACATTTCAGGGGCCACGATTGGGAAACGATATGCAAGAACCGATGAACTTGGTATACCCTTTGCAATCACCGTTGATTCAACATCATCGGTTACAATTCGGGAGAGGGACAGCAAGGATCAAATTCGTGTTAATGTTGAAGAGGTAGTTTCAGTTGTGAAGGACGTAACTGATGGACAGAGCTCCTGGGCAGATGCGAAGGGGAGATTCCCAGCCCATTCTTCAGTGTCTGCAGATGCTTAA 2004 0.4561 MRFFYPVISPSNLRFLSRCRLFNASSPKPQESAATHVLRRNVLSMNVAVNREAFRQAVANTLERRLFYIPSFKIYRGVAGLYDYGPPGCAVKANVLAFWRQHFVLEENMLEVDCPCVTPEVVLKASGHVDKFTDLMVKDEKTGTCYRADHLVKDFCNEKLQNDNTMTADKAAELRHMLAVLDDLSAEELGARIKEYGITAPETKSPLSDPYPFNLMFQTSIGPSGLIPGYMRPETAQGIFVNFKDLYYYNGSKLPFAAAQIGQAFRNEISPRQGLLRVREFTLAEIEYFVDPEDKSHPKYSEVADLEFLMFPREEQTSGQSTRTIQLGEAVSTGIVNNETLAYFIGRVYLFLTRLGIDKDRLRFRQHLAKEMAHYAADCWDAEIECSYGWIECVGIADRSAYDLRAHSEKSGVDLVAHEKFSEPREVEKLVIATVKKELGLAFRGNQKMVVEALEAMDEKEALEMKATLESKGEAEFNVCTLGKNVTIKKNMVTISKEKKKEHQRVFTPSVIEPSFGIGRIIYCLFEQCFYTRPSKAGDEQLNVFAFPPLVAPIKCSVFPLIQDKKYDAVAKLISKSLTVAGISHKIDISGATIGKRYARTDELGIPFAITVDSTSSVTIRERDSKDQIRVNVEEVVSVVKDVTDGQSSWADAKGRFPAHSSVSADA* 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1582 667 Gene3D - 553 663 IPR036621 -
Vvi1g1582 667 FunFam Glycine--tRNA ligase 131 215 - -
Vvi1g1582 667 SUPERFAMILY Class II aaRS ABD-related 544 658 - -
Vvi1g1582 667 PANTHER GLYCYL-TRNA SYNTHETASE/DNA POLYMERASE SUBUNIT GAMMA-2 37 662 IPR027031 -
Vvi1g1582 667 FunFam Glycine--tRNA ligase 2 553 664 - -
Vvi1g1582 667 ProSiteProfiles Aminoacyl-transfer RNA synthetases class-II family profile. 193 534 IPR006195 -
Vvi1g1582 667 PRINTS Glycyl-tRNA synthetase signature 509 521 - -
Vvi1g1582 667 PRINTS Glycyl-tRNA synthetase signature 74 88 - -
Vvi1g1582 667 PRINTS Glycyl-tRNA synthetase signature 279 289 - -
Vvi1g1582 667 PRINTS Glycyl-tRNA synthetase signature 594 613 - -
Vvi1g1582 667 PRINTS Glycyl-tRNA synthetase signature 230 247 - -
Vvi1g1582 667 PRINTS Glycyl-tRNA synthetase signature 211 223 - -
Vvi1g1582 667 PRINTS Glycyl-tRNA synthetase signature 262 279 - -
Vvi1g1582 667 Gene3D - 432 500 - -
Vvi1g1582 667 Gene3D - 131 215 - -
Vvi1g1582 667 Pfam tRNA synthetase class II core domain (G, H, P, S and T) 230 528 IPR002314 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Vvi1g1582 667 FunFam Glycyl-tRNA synthetase 1 213 421 - -
Vvi1g1582 667 SUPERFAMILY Class II aaRS and biotin synthetases 56 558 IPR045864 -
Vvi1g1582 667 Pfam Anticodon binding domain 555 641 IPR004154 -
Vvi1g1582 667 CDD GlyRS-like_core 58 404 IPR033731 -
Vvi1g1582 667 Gene3D Bira Bifunctional Protein; Domain 2 59 421 IPR045864 -
Vvi1g1582 667 NCBIfam glycine--tRNA ligase 56 642 IPR002315 GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426
Vvi1g1582 667 FunFam Glycine--tRNA ligase 2 431 500 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1582 Vvi-Chr1 22596675 22602000 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1582 K01880 - vvi:100262502 1317.37