Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1578 ATGGCTAAGAGTAAAGGAAAGAAGTCTAGAAATAATGGGCCTCATGTGAACCCCCCAAATGCGAGTAAGAAGATAGAGAAGAAATCTTCAAAGAAAAAGAAGAAAGTGAAGAAAATCAACGAGGCTTCTGCCCTTGATATTGGTCCTTCTTCTACTTCTACTCCTAATACGACTATCATTGCTTCCTCTAATGCCACTCCTCCTAATGCTAGCAATAAAGGGGAGAAAAAGAAGGAGAAGGGGAATGAGGAGTGGGTTTTTGGGTTTATATTCATGTGTAATGGAAAAACAAAACCTCAATGCTACCAATATCGTGTTTTTGGGCTACCAACGGGGAGAAAGGAAGAAGTAGCAAAAATCAAAGTGGGAACGAAGCTTTTCTTGTTCGACTTTGACTTGAAACTTCTCTATGGCATATATGAGGCAAGCTCTAAAGGACAAATGAATTTGGAACAAGACGCTTTCAATGGGAAATTTCCTGCACAGGTGAAGTTCAAGATTTGGAAGGAATGTTTACCACTTTCTGAGGGTGCTTTCAAAAATGCTATTCGAGATAACTATGAAGGCTCCAAGTTTAGGCCGGAGCTTACTAAAAAACAGGTGAAAGCTTTAATTTCATTGTTCCGTCCAATCAATGTGCCATTACCAACTTCTGTTGCTCCTTTGGGTTCGAATGTGGCCCCACTACATTCATTCCCAGCTCCACTTGTGGAGGAACAGTTCCGCCCATCGGCAGGACTGCCTCCTTTAGAGGACCCATATTTACCAGGCGTTCAACATACTCATGGCCCACTTGTTTTGCATCCTCGTTCTGCTCAAGTGGTTTCATCTTCGCTATACGATCATTATGGAGCAACTGCACCACCATCTTCAGTGTATGATCATTATGAAGCAGCGCCCTCTGTGGCACGTGTGCAAGCTTCAATAGAAGAACCTCGTGTTGTTCGGCAGACTACTCTTCCTCATCATACTGACCCCTATTATTGCACAGCAGCACCTCAGACATACTTGACTGAAAAACCTGTCTCATCCACACAATATCCATACAGAAGGTATGTGACTGCACCTGAGATGGTTCGTAGAGACCATCCTGTTGGTTATGAAAGGGAGTATCGTGTCTCTCACTTGCCAAGGGTGGATGAAGCCCTCCTACCAATCGAAGCTTTAGTTGATTACTACAATCAACGCCCGCTACCAGCTGCAAACACCCATCCTTCATTACGACCCCATGCTTTGGGACCACCATATGTCCCAGCACCGGCATCACATGCATTACCAGAATTGCCATCTTCGCATAGATCATATTATGCTCGAGAGGAACCAAGCCGGGTTTATGCTGTCGATCCTCTTCGAAGACCAATGCCTGGAAGGCTGAGCTTGGCTGAGCCAGTTGCACCGGTGTCTTCCTTTTATTCCTTTGCTGGGCCTCCGCCAACTTTCCGGTAA 1446 0.4495 MAKSKGKKSRNNGPHVNPPNASKKIEKKSSKKKKKVKKINEASALDIGPSSTSTPNTTIIASSNATPPNASNKGEKKKEKGNEEWVFGFIFMCNGKTKPQCYQYRVFGLPTGRKEEVAKIKVGTKLFLFDFDLKLLYGIYEASSKGQMNLEQDAFNGKFPAQVKFKIWKECLPLSEGAFKNAIRDNYEGSKFRPELTKKQVKALISLFRPINVPLPTSVAPLGSNVAPLHSFPAPLVEEQFRPSAGLPPLEDPYLPGVQHTHGPLVLHPRSAQVVSSSLYDHYGATAPPSSVYDHYEAAPSVARVQASIEEPRVVRQTTLPHHTDPYYCTAAPQTYLTEKPVSSTQYPYRRYVTAPEMVRRDHPVGYEREYRVSHLPRVDEALLPIEALVDYYNQRPLPAANTHPSLRPHALGPPYVPAPASHALPELPSSHRSYYAREEPSRVYAVDPLRRPMPGRLSLAEPVAPVSSFYSFAGPPPTFR* 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1578 481 MobiDBLite consensus disorder prediction 45 71 - -
Vvi1g1578 481 ProSiteProfiles DCD domain profile. 84 210 IPR013989 -
Vvi1g1578 481 PANTHER DCD (DEVELOPMENT AND CELL DEATH) DOMAIN PROTEIN-RELATED 7 477 - -
Vvi1g1578 481 MobiDBLite consensus disorder prediction 1 78 - -
Vvi1g1578 481 Pfam Development and cell death domain 88 208 IPR013989 -
Vvi1g1578 481 SMART dcd 84 210 IPR013989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1578 Vvi-Chr1 22551857 22561690 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1578 - - vvi:100255660 928.317