Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1567 ATGGCAGAGTTACAGCCACCAGAAAGTACCGTCAACGCCGGTCTGGTGGGAGTAGCCATAGCTCCGGCAGTCCCGGCGGCGGTAGAAAATCTATCGACGTCTCTTGCTCCGAAGCGGCAGCGGCGGCCGAGCGTCAGGCTGGGGGAGATCGGAGACCAGCCGGCGGCGACGCTGTCGTACGACTCTCAAGCGAGAAGAGTGAAGCCGTGGCGGTTCCATAAGGACTATGGTCAAGCATCGAAGGCGTCGAAGACTCGACCTCTCACAAATCTGGTGAATGGCGGAGAGTGCCACGAAACCCTAGAAACAGAAGAAAGGAGCTTCGCCGGCGACGGGAATCTCGATTCGGCGGTGTTCGGGAACCGGAAAGCGAAGAGGAGAGGCGCGACGAAGAGAGTAAGATCGAATTGGGCGACGAAGTTCGACGACGGAGCTGAAGGGGATGAGAAGTTCAGCGGCAGGGAAGACGACGAGGAAGAGTATAGGGATTTCGATCCGGAGGGCTCCGAGAGTCTATTAAAGGAGCAGAGTCCTGTTCACTCCGTCGATAATGTGGCTCTCGATTTGTGGCACGGCCATCGAAGACCGGTTAGGGCGAGGGTGTCGGAAAGCAGAGAACACGATGCTGTTGAATTGGACGCAATGCCTGACTCCGATTCTCGTGATCGGAAGTGTCGCACCAGTGCGGATAGGAATTTGACTGCAAATCGCCTGCTTGACGATGGTGTGAGAACCTGGCTCTTCGGACTGGGGCTAGGCCGATACGCCCCGGTTTTCGAGATACATGAGGTGGATTTTGAGGTTCTGCCATTGTTGACACTGGAGGATCTCAAAGATATGGGGATAAACGCCGTTGGTTCTCGCCGGAAAATTTACACTGCAATCCAAAATCTTCGCAAAGGGTTTACGTGA 912 0.5548 MAELQPPESTVNAGLVGVAIAPAVPAAVENLSTSLAPKRQRRPSVRLGEIGDQPAATLSYDSQARRVKPWRFHKDYGQASKASKTRPLTNLVNGGECHETLETEERSFAGDGNLDSAVFGNRKAKRRGATKRVRSNWATKFDDGAEGDEKFSGREDDEEEYRDFDPEGSESLLKEQSPVHSVDNVALDLWHGHRRPVRARVSESREHDAVELDAMPDSDSRDRKCRTSADRNLTANRLLDDGVRTWLFGLGLGRYAPVFEIHEVDFEVLPLLTLEDLKDMGINAVGSRRKIYTAIQNLRKGFT* 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1567 303 CDD SAM_superfamily 243 296 - -
Vvi1g1567 303 MobiDBLite consensus disorder prediction 140 177 - -
Vvi1g1567 303 Pfam SAM domain (Sterile alpha motif) 242 299 IPR001660 GO:0005515
Vvi1g1567 303 SUPERFAMILY SAM/Pointed domain 241 300 IPR013761 -
Vvi1g1567 303 ProSiteProfiles SAM domain profile. 241 301 IPR001660 GO:0005515
Vvi1g1567 303 SMART SAM_4 235 301 IPR001660 GO:0005515
Vvi1g1567 303 MobiDBLite consensus disorder prediction 140 157 - -
Vvi1g1567 303 PANTHER SCP160 206 301 - -
Vvi1g1567 303 Gene3D - 231 302 IPR013761 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1567 Vvi-Chr1 22388239 22389150 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1567 226 295 Glycosyltransferase AT3G07170 35.714 2.38e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1567 - - vvi:100242008 585.104