Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1564 ATGAATATATGTTTGCGGCCATGGATACGTCTAAATTATGCGATGGTTTGTCGAAACAATTTTTTGATTCAATTTTCTCGACGTGGGTTCTCAGTCCAATCTGCAAAACTGACTCAAGAATTCGTGGGTCATGTTTCCCCTTCAGAGTTCAATTCACATGCATACGCCAATGCGCTTCAAGATTGTATCCAAAAAGATGAACCCAGTAGAGGAAAGGGTCTGCATTGTGAGATTCTGAAAAGGGGTGGTTGCTTGGACTTGTTTGCTTGGAACATTCTCCTCAATATGTACGTAAAGTCAGATTTTTTGTGTGATGCGAGTAAATTGTTTGATGAAATGCCTGAAAGAAATACAATCTCATTTGTTACTTTAATTCAAGGTTATGCAGAGTCTGTTCGATTTTTGGAGGCGATTGAGTTGTTTGTTAGATTGCATAGGGAGGGTCATGAGCTTAATCCGTTTGTTTTTACCACAATTCTGAAGTTGCTTGTGAGTACGGACTGTGGGGAGTTAGGTTGGGGCATCCATGCCTGCATTTTTAAGCTTGGTCATGAGTCCAATGCATTTGTAGGGACTGCACTTATTGATGCTTATTCAGTTTGTGGACGTGTTGATGTTGCCAGAGAAGTGTTTGATGGGATTCTTTACAAGGACATGGTTTCTTGGACTGGGATGGTAACTTGTTTTGCGGAGAATGATTGTTTCAAAGAGGCTTTGAAGCTCTTTTCTCAAATGAGGATGGTCGGGTTTAAGCCAAATAACTTTACATTTGCTAGTGTGTTTAAGGCTTGTCTTGGTTTAGAGGCATTTGATGTGGGGAAGAGTGTGCATGGGTGTGCCTTAAAATCTCGCTATGAGTTGGATCTATATGTAGGTGTTGCTTTGCTTGATTTGTATACTAAGTCTGGAGACATCGATGATGCTCGGCGGGCATTTGAGGAGATTCCTAAAAAGGATGTGATCCCTTGGAGTTTTATGATTGCACGTTATGCTCAAAGTGACCAGAGCAAGGAGGCTGTGGAAATGTTTTTTCAGATGAGGCAAGCTTTAGTGCTTCCTAATCAGTTTACTTTTGCGAGTGTGCTGCAAGCATGTGCAACTATGGAGGGTTTAAATTTGGGAAATCAAATACATTGCCATGTAATCAAGATTGGCCTTCACTCTGATGTTTTTGTTTCAAATGCCTTAATGGATGTCTATGCAAAATGTGGAAGGATGGAGAACTCAATGGAACTTTTTGCGGAGTCACCACATAGGAATGATGTGACCTGGAACACGGTGATCGTTGGGCATGTGCAGTTAGGGGATGGGGAGAAGGCTTTAAGATTGTTTCTCAATATGCTTGAATACCGAGTGCAGGCAACTGAAGTAACATACTCTAGTGCTCTTCGTGCTTGTGCTAGCTTAGCAGCATTGGAGCCAGGACTTCAGATTCATTCCTTGACAGTCAAAACCACTTTTGACAAAGATATTGTAGTGACTAATGCTTTGATAGATATGTATGCCAAGTGTGGGAGCATTAAAGATGCCCGATTAGTGTTTGATTTGATGAACAAACAAGATGAAGTTTCATGGAATGCTATGATCTCAGGATACTCCATGCATGGTTTGGGTAGGGAGGCTCTAAGAATTTTTGACAAGATGCAGGAAACAGAGGTCAAACCTGACAAGTTAACTTTTGTTGGTGTACTATCAGCATGCGCCAATGCAGGCCTTTTAGATCAAGGCCAAGCTTATTTTACTTCAATGATACAAGACCATGGTATTGAACCTTGCATAGAGCACTATACATGCATGGTGTGGCTGTTAGGTCGAGGAGGCCATCTTGACAAGGCTGTCAAGTTGATTGACGAAATTCCATTTCAGCCTAGTGTTATGGTTTGGCGTGCTTTACTTGGAGCTTGTGTGATCCATAATGACATTGAGCTTGGGAGAATTTCTGCTCAGCGTGTGCTTGAGATGGAACCCCAAGACAAGGCTACCCACGTGTTACTGTCTAACATGTATGCCACTGCAAAGAGATGGGACAATGTTGCCTCTGTTAGGAAAAACATGAAAAGAAAAGGAGTGAAGAAGGAACCAGGCCTTAGTTGGATTGAAAGCCAGGGCACAGTTCATTCTTTCACTGTGGGGGATACTTCACACCCTGAGGTGAGAGTGATTAATGGGATGCTGGAGTGGTTGCACATGAAAACCAAGAAGGCAGGCTACATTCCAAACTATAATGTTGTTTTGCTTGATGTGGAGGATGAAGAAAAGGAACGCCTCTTGTGGGTACACAGTGAAAGATTAGCTCTTTCTTTTGGGATAATTAGGACACCATCTGGAAGCCCCATTAGGATAATGAAAAATCTACGAATATGTGTGGATTGCCATGCTGCAATTAAGTGTATATCAAAGGTTGTGCAGCGAGAAATTGTTGTCAGAGACATCAATCGATTCCATCACTTTCAAGAAGGTTTATGCTCTTGTGGTGATTATTGGTGA 2487 0.4186 MNICLRPWIRLNYAMVCRNNFLIQFSRRGFSVQSAKLTQEFVGHVSPSEFNSHAYANALQDCIQKDEPSRGKGLHCEILKRGGCLDLFAWNILLNMYVKSDFLCDASKLFDEMPERNTISFVTLIQGYAESVRFLEAIELFVRLHREGHELNPFVFTTILKLLVSTDCGELGWGIHACIFKLGHESNAFVGTALIDAYSVCGRVDVAREVFDGILYKDMVSWTGMVTCFAENDCFKEALKLFSQMRMVGFKPNNFTFASVFKACLGLEAFDVGKSVHGCALKSRYELDLYVGVALLDLYTKSGDIDDARRAFEEIPKKDVIPWSFMIARYAQSDQSKEAVEMFFQMRQALVLPNQFTFASVLQACATMEGLNLGNQIHCHVIKIGLHSDVFVSNALMDVYAKCGRMENSMELFAESPHRNDVTWNTVIVGHVQLGDGEKALRLFLNMLEYRVQATEVTYSSALRACASLAALEPGLQIHSLTVKTTFDKDIVVTNALIDMYAKCGSIKDARLVFDLMNKQDEVSWNAMISGYSMHGLGREALRIFDKMQETEVKPDKLTFVGVLSACANAGLLDQGQAYFTSMIQDHGIEPCIEHYTCMVWLLGRGGHLDKAVKLIDEIPFQPSVMVWRALLGACVIHNDIELGRISAQRVLEMEPQDKATHVLLSNMYATAKRWDNVASVRKNMKRKGVKKEPGLSWIESQGTVHSFTVGDTSHPEVRVINGMLEWLHMKTKKAGYIPNYNVVLLDVEDEEKERLLWVHSERLALSFGIIRTPSGSPIRIMKNLRICVDCHAAIKCISKVVQREIVVRDINRFHHFQEGLCSCGDYW* 829
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1564 828 FunFam Pentatricopeptide repeat-containing protein At2g40720 41 169 - -
Vvi1g1564 828 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 521 555 IPR002885 -
Vvi1g1564 828 FunFam Putative pentatricopeptide repeat-containing protein, mitochondrial 175 269 - -
Vvi1g1564 828 Pfam DYW family of nucleic acid deaminases 736 828 IPR032867 GO:0008270
Vvi1g1564 828 FunFam Pentatricopeptide repeat-containing protein mitochondrial 272 370 - -
Vvi1g1564 828 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 490 520 IPR002885 -
Vvi1g1564 828 Pfam PPR repeat 323 348 IPR002885 -
Vvi1g1564 828 Pfam PPR repeat 89 117 IPR002885 -
Vvi1g1564 828 Pfam PPR repeat 192 213 IPR002885 -
Vvi1g1564 828 Pfam PPR repeat 120 148 IPR002885 -
Vvi1g1564 828 Pfam PPR repeat 595 619 IPR002885 -
Vvi1g1564 828 Pfam PPR repeat 394 415 IPR002885 -
Vvi1g1564 828 Pfam PPR repeat 494 519 IPR002885 -
Vvi1g1564 828 Pfam PPR repeat 294 319 IPR002885 -
Vvi1g1564 828 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 218 252 IPR002885 -
Vvi1g1564 828 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 288 322 IPR002885 -
Vvi1g1564 828 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 86 120 IPR002885 -
Vvi1g1564 828 Pfam E motif 638 700 IPR046848 -
Vvi1g1564 828 Gene3D Tetratricopeptide repeat domain 494 722 IPR011990 GO:0005515
Vvi1g1564 828 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 420 454 IPR002885 -
Vvi1g1564 828 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 218 765 IPR046960 GO:0003723|GO:0009451
Vvi1g1564 828 FunFam Pentatricopeptide repeat-containing protein, chloroplastic 492 718 - -
Vvi1g1564 828 Gene3D Tetratricopeptide repeat domain 270 375 IPR011990 GO:0005515
Vvi1g1564 828 Gene3D Tetratricopeptide repeat domain 175 269 IPR011990 GO:0005515
Vvi1g1564 828 Gene3D Tetratricopeptide repeat domain 30 171 IPR011990 GO:0005515
Vvi1g1564 828 Gene3D Tetratricopeptide repeat domain 376 473 IPR011990 GO:0005515
Vvi1g1564 828 Pfam PPR repeat family 420 467 IPR002885 -
Vvi1g1564 828 Pfam PPR repeat family 521 569 IPR002885 -
Vvi1g1564 828 Pfam PPR repeat family 217 264 IPR002885 -
Vvi1g1564 828 FunFam Putative pentatricopeptide repeat-containing protein, mitochondrial 371 485 - -
Vvi1g1564 828 NCBIfam pentatricopeptide repeat 494 521 IPR002885 -
Vvi1g1564 828 NCBIfam pentatricopeptide repeat 422 453 IPR002885 -
Vvi1g1564 828 NCBIfam pentatricopeptide repeat 523 556 IPR002885 -
Vvi1g1564 828 NCBIfam pentatricopeptide repeat 220 253 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1564 Vvi-Chr1 22336280 22338766 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1564 51 828 Glycoside Hydrolase AT3G49170 37.074 0.0 546
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1564 - - vvi:100253986 1673.68