Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1560 ATGTCGAAAAGACTAAAAACCATGACGTATTTTCCAGCGGAGGTTTTAGAGCGGATATTCGCACTGCTCACGTCCCAGAGAGACCGGAACAGCGTGTGTCTGGTCTGTAAGTACTGGTGGAAGGTGGAGGCTGGATGCAGATTGAGGGTTTCTGTGAAGAATTGTTATGCTTTGGGGCCTAATAGGGTTTTGGCGAGGTTTCCAAGGATGAGGGCTTTGAGCCTGAAGGGAAAGCCCCATTTTGCTGGTTTGAACATGGTGAATTGGGGTGGTTTTGCTTTGCCTTGGATTGAGTTCTTCGCCAAGAATTGTCCATGGCTACAAGAGCTTCGATTGAAGAGGATGGTTGTTTCCGATCAGAGTCTTCAAATGATTTCTCTTTCCTTTTCGGAGTTTGAGTCTCTGTCTTTGATCCGCTGTGGAGGGTTCAGCCCTGTTGGGCTTGCAGCCATTGCTTCCAATTGCAGGTTTCTTAAAGAGCTGGTATTGCTGGAAAATGAAGTTGAAGAGGACATAGGCCATATACTTGGTGTTGGGGTTGGAGATGGCATAGGCCAGTGGCTTAGTTGCTTTCCTGAAAGCTGCTCGTCTCTTGTCTCCCTGAATTTTGCATGTACTAAAGGAGTAGTGAATTTGGAAGCTCTTGAGAAACTGGTTGCTAGATGTCCAAACCTCAGGAGCCTGCGGTTAAACCGCCGAGTGCCACCTAATGTTCTCCAGAGACTCCTGCAGCAGGCACCTCAACTGGAGGACTTGGGGATAGGGTCTTTTTCCAACTACACAGACCGGAGAACTTACTTGAGACTGCAGAATGCTGTGTCGAAATGTCGATCAATCCGGAGCCTATCTGGTTTTTCATCGTTTACCCCTCTGTATCAGGCTGCTATTTACCCTATGTGCTCAAACCTGATTTCCTTGAACCTGAGCAAAGCAGTAGAGCTTCCAGCTCACAGTCTCATGGAGATAATTTCCCGCTGCAAAAAACTTCAAAATCTTTGGGTCTTGGATAATATTGGCGACAAGGGGCTAGGATTAGTGGCTGATACTTGTAAAAACCTTCAAGTGTTGAGGGTATTTCGACTTGGTTCCCATAATGAAGGGAATCCAGCTCTAACTGAAGAAGGTCTAATTGCTATATCCATGGGTTGCCCTCAACTTCATTCTTTGGTATATTGCTGTGATCAGATGACAAATGCTTCCCTAATAACTGTTGCCAGAAACTGTCCTAATCTCACCAACTTCAAATTATGCATCAATGACCCAAAGACGCCTGATCATACAACTTCACAACCTTTTGATGAAGGCTTTGGGGCAATCGTTCAGTCATGCAAGGGGCTCAGACGGCTGTCACTGTCTGGCCTTCTAAGTGACCAAGTTTTCCTCTACATTGGAATGTATGCAGAGCAGTTAGAAATGCTTTCAATTGGATCTTCTGGGGGAGGTGATAAAGAATTATCCTATGTCTTAAATGGTTGTAGGAACCTCATGAAATTGGAGATCAAGGGCAGTCCCTTTGTTGATGCTGGACTCCTGGAAGAGATAGTGAAGCATGAAAAAATACGATGCCTCTGGATTTCATCCTCCAAAGTTACTCTTGGAGGATGCAGGGCACTCTCAATGCAGGTGCCCATGATGAACATAGAGATCATAGGGGAAAACAACAAGATGAAGAAGGATGATGATCATAAGGTCGGGAAAATGTACCTCTACCGAACCCTCAATGGACCCAGAAAAGATGCACCAGCTTCTGTTTGGACTCTGTAA 1764 0.4552 MSKRLKTMTYFPAEVLERIFALLTSQRDRNSVCLVCKYWWKVEAGCRLRVSVKNCYALGPNRVLARFPRMRALSLKGKPHFAGLNMVNWGGFALPWIEFFAKNCPWLQELRLKRMVVSDQSLQMISLSFSEFESLSLIRCGGFSPVGLAAIASNCRFLKELVLLENEVEEDIGHILGVGVGDGIGQWLSCFPESCSSLVSLNFACTKGVVNLEALEKLVARCPNLRSLRLNRRVPPNVLQRLLQQAPQLEDLGIGSFSNYTDRRTYLRLQNAVSKCRSIRSLSGFSSFTPLYQAAIYPMCSNLISLNLSKAVELPAHSLMEIISRCKKLQNLWVLDNIGDKGLGLVADTCKNLQVLRVFRLGSHNEGNPALTEEGLIAISMGCPQLHSLVYCCDQMTNASLITVARNCPNLTNFKLCINDPKTPDHTTSQPFDEGFGAIVQSCKGLRRLSLSGLLSDQVFLYIGMYAEQLEMLSIGSSGGGDKELSYVLNGCRNLMKLEIKGSPFVDAGLLEEIVKHEKIRCLWISSSKVTLGGCRALSMQVPMMNIEIIGENNKMKKDDDHKVGKMYLYRTLNGPRKDAPASVWTL* 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1560 587 FunFam Transport inhibitor response 1 7 47 - -
Vvi1g1560 587 Pfam Transport inhibitor response 1 protein domain 68 112 IPR041101 -
Vvi1g1560 587 Gene3D Ribonuclease Inhibitor 48 587 IPR032675 -
Vvi1g1560 587 Gene3D - 4 47 - -
Vvi1g1560 587 SUPERFAMILY RNI-like 23 545 - -
Vvi1g1560 587 Pfam F-box 9 47 IPR041567 -
Vvi1g1560 587 SMART LRR_CC_2 129 154 IPR006553 -
Vvi1g1560 587 SMART LRR_CC_2 104 128 IPR006553 -
Vvi1g1560 587 SMART LRR_CC_2 492 517 IPR006553 -
Vvi1g1560 587 SMART LRR_CC_2 383 407 IPR006553 -
Vvi1g1560 587 SMART LRR_CC_2 300 325 IPR006553 -
Vvi1g1560 587 CDD F-box_AtTIR1-like 8 47 - -
Vvi1g1560 587 PANTHER F-BOX/TPR REPEAT PROTEIN POF3 12 251 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1560 Vvi-Chr1 22308750 22311393 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1560 - - vvi:100252378 1158.28