Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1539 ATGGCAAAGCATGGGTTGGTTAGAGACCTCTATCTGCCTAATTCATCTCCATTTGCAAAGCTCTTGGACTCCTGCCTCCGTTCAAGGTCGGCCAGGGGCACTCGTCTGGTTCACGCCCGCATTCTCATGACTCAGTTTTCAATGGAAATCTTCATTCAGAACAGGTTGATTGATGTTTATGGGAAATGTGACTGTTTGGATGATGCCCGCAAGTTGTTTGATAGAATGCCCCAAAGGAACACTTTCACTTGGAATTCCCTTATAAGTGTGTTGACTAAATCGGGATTTCTTGATGAGGCAGCAAGGCTCTTTGGTTCAATGCCTGAGCCTGATCAGTGCTCGTGGAATTCGATGGTGTCGGGTTTCGCTCAACATGATCGATTCGAAGAATCTTTAGAATATTTTGTTAAGATGCATAGGGAGGACTTTTTGCTTAATGAGTACTCGTTTGGTAGTGCTCTGAGTGCCTGTGCAGGGTTGATGGATTTAAATATGGGTACCCAAGTCCATGCTTTGGTATCAAAATCTAGGTATTCAACCGATGTTTATATGGGGTCTGCCCTTATTGATATGTACTCTAAGTGTGGGAGTGTGGCTTGCGCTGAGGAAGTTTTTTCAGGAATGATCGAGCGGAACTTAGTCACATGGAATAGCTTGATTACCTGTTACGAGCAAAATGGTCCAGCAAGTGAAGCTCTAGAGGTATTTGTGAGGATGATGGACTCTGGACTAGAACCAGATGAGGTCACGCTAGCTAGCGTAGTCAGTGCCTGTGCAAGCTTGTGTGCACTCAAAGAAGGCCTGCAAATTCATGCCCGTGTCGTGAAAACTAACAAATTTAGGGATGATCTTGTTTTGGGCAATGCTTTGGTTGATATGTATGCAAAATGCAGTAAAGTTAATGAAGCCAGAAGGGTTTTTGATAGGATGTCTATTAGGAATGTCGTGTCTGAAACCTCCATGGTAAGCGGGTATGCAAGGGCAGCAAGCGTAAAAGCTGCAAGATTTATGTTTTCGAAGATGACACAAAGGAATGTAGTATCTTGGAATGCACTTATTGCAGGTTATACACAGAATGGGGAGAATGAAGAGGCTCTCAGACTCTTCCGCCTCCTAAAGAGGGAATCCATTTGGCCAACCCATTATACCTTTGGGAATCTCCTTAGTGCTTGTGCCAATCTCGCTGATCTGCTGCTCGGTCGTCAGGCTCATACCCATGTCTTGAAGCAAGGTTTTGAGTTCCAGTCTGGAGCAGAGTCTGATATTTTTGTGGGAAACTCTCTCATAGACATGTACATGAAATGCGGTTCAATTGAAGATGGGAGCCGGGTGTTTGAGAAAATGAAGGAAAGAGATTGTGTTTCATGGAATGCCATAATAGTAGGGTATGCACAAAATGGTTATGGGGCAGAAGCTCTTCAAATTTTCAGAAAAATGTTGGTATGTGGAGAGAAACCCGACCATGTTACTATGATAGGAGTTCTATGTGCTTGTAGCCATGCAGGCTTGGTTGAAGAGGGCCGTCACTATTTCTTTTCAATGGAGGAGCATGGTTTAATACCACTGAAGGACCATTATACATGTATGGTCGATTTACTAGGACGAGCTGGTTGCCTCAATGAAGCAAAGAATTTAATTGAAGCAATGCCAGTGAATCCTGATGCTGTCGTGTGGGGGTCTTTGCTTGCTGCTTGTAAAGTTCATGGCAACATCGAAATGGGGAAGCATGCAGCAGAGAAGCTTTTGGAGATCGATCCTTGGAACTCTGGACCTTATGTTCTTCTCTCAAACATGTATGCTGAGCTTGGAAGATGGGGAGATGTTGTAAGAGTAAGGAAACTTATGAGGCAACAGGGGGTCACTAAGCAGCCAGGTTGCAGTTGGATTGAAGTAGAGAGCCGAGTGCATGTTTTCCTGGTTAAAGATAAAAGCCATCCTCATAGGAAGCAAATCTATTCAGTTCTCAAAATGCTCACAGAGCAAATGAAGCGGGTTGGATATATCCCAGATGCCAATGATTTCGAGGCTTATGATGAGCAGAGCAAATCTGAATAA 2055 0.4399 MAKHGLVRDLYLPNSSPFAKLLDSCLRSRSARGTRLVHARILMTQFSMEIFIQNRLIDVYGKCDCLDDARKLFDRMPQRNTFTWNSLISVLTKSGFLDEAARLFGSMPEPDQCSWNSMVSGFAQHDRFEESLEYFVKMHREDFLLNEYSFGSALSACAGLMDLNMGTQVHALVSKSRYSTDVYMGSALIDMYSKCGSVACAEEVFSGMIERNLVTWNSLITCYEQNGPASEALEVFVRMMDSGLEPDEVTLASVVSACASLCALKEGLQIHARVVKTNKFRDDLVLGNALVDMYAKCSKVNEARRVFDRMSIRNVVSETSMVSGYARAASVKAARFMFSKMTQRNVVSWNALIAGYTQNGENEEALRLFRLLKRESIWPTHYTFGNLLSACANLADLLLGRQAHTHVLKQGFEFQSGAESDIFVGNSLIDMYMKCGSIEDGSRVFEKMKERDCVSWNAIIVGYAQNGYGAEALQIFRKMLVCGEKPDHVTMIGVLCACSHAGLVEEGRHYFFSMEEHGLIPLKDHYTCMVDLLGRAGCLNEAKNLIEAMPVNPDAVVWGSLLAACKVHGNIEMGKHAAEKLLEIDPWNSGPYVLLSNMYAELGRWGDVVRVRKLMRQQGVTKQPGCSWIEVESRVHVFLVKDKSHPHRKQIYSVLKMLTEQMKRVGYIPDANDFEAYDEQSKSE* 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1539 684 Pfam PPR repeat 82 108 IPR002885 -
Vvi1g1539 684 Pfam PPR repeat 288 313 IPR002885 -
Vvi1g1539 684 Pfam PPR repeat 525 550 IPR002885 -
Vvi1g1539 684 Pfam PPR repeat 54 80 IPR002885 -
Vvi1g1539 684 Pfam PPR repeat 114 142 IPR002885 -
Vvi1g1539 684 FunFam Pentatricopeptide repeat-containing protein At2g13600 516 674 - -
Vvi1g1539 684 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 345 379 IPR002885 -
Vvi1g1539 684 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 212 246 IPR002885 -
Vvi1g1539 684 Pfam PPR repeat family 452 498 IPR002885 -
Vvi1g1539 684 Pfam PPR repeat family 212 259 IPR002885 -
Vvi1g1539 684 Pfam PPR repeat family 344 393 IPR002885 -
Vvi1g1539 684 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 452 486 IPR002885 -
Vvi1g1539 684 Pfam E motif 568 630 IPR046848 -
Vvi1g1539 684 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 283 317 IPR002885 -
Vvi1g1539 684 Gene3D Tetratricopeptide repeat domain 341 400 IPR011990 GO:0005515
Vvi1g1539 684 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 80 110 IPR002885 -
Vvi1g1539 684 Gene3D Tetratricopeptide repeat domain 498 584 IPR011990 GO:0005515
Vvi1g1539 684 Gene3D Tetratricopeptide repeat domain 164 264 IPR011990 GO:0005515
Vvi1g1539 684 Gene3D Tetratricopeptide repeat domain 401 497 IPR011990 GO:0005515
Vvi1g1539 684 Gene3D Tetratricopeptide repeat domain 265 340 IPR011990 GO:0005515
Vvi1g1539 684 Gene3D Tetratricopeptide repeat domain 8 163 IPR011990 GO:0005515
Vvi1g1539 684 FunFam Pentatricopeptide repeat-containing protein, chloroplastic 165 265 - -
Vvi1g1539 684 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 487 521 IPR002885 -
Vvi1g1539 684 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 421 451 IPR002885 -
Vvi1g1539 684 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 111 145 IPR002885 -
Vvi1g1539 684 FunFam Pentatricopeptide repeat-containing protein mitochondrial 402 515 - -
Vvi1g1539 684 NCBIfam pentatricopeptide repeat 288 315 IPR002885 -
Vvi1g1539 684 NCBIfam pentatricopeptide repeat 454 487 IPR002885 -
Vvi1g1539 684 NCBIfam pentatricopeptide repeat 214 248 IPR002885 -
Vvi1g1539 684 NCBIfam pentatricopeptide repeat 54 79 IPR002885 -
Vvi1g1539 684 NCBIfam pentatricopeptide repeat 426 454 IPR002885 -
Vvi1g1539 684 NCBIfam pentatricopeptide repeat 82 108 IPR002885 -
Vvi1g1539 684 NCBIfam pentatricopeptide repeat 347 377 IPR002885 -
Vvi1g1539 684 NCBIfam pentatricopeptide repeat 114 146 IPR002885 -
Vvi1g1539 684 Pfam E+ motif 635 662 IPR046849 -
Vvi1g1539 684 SUPERFAMILY TPR-like 63 610 IPR011990 GO:0005515
Vvi1g1539 684 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 8 109 IPR046960 GO:0003723|GO:0009451
Vvi1g1539 684 FunFam Pentatricopeptide repeat-containing protein At3g49710 23 164 - -
Vvi1g1539 684 FunFam PPR containing plant-like protein 266 401 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1539 Vvi-Chr1 22058282 22060336 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1539 12 672 Glycoside Hydrolase AT3G49170 33.782 6.86e-123 384
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1539 - - vvi:100253980 1373.99