Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1525 ATGGATTGCTGGTCTCCCTCTCTCACTGTTGATGATGAATTTGAGAAGCTCGTGATTCGAATGAACCCTCCGAGGGTTACTGTTGATAATGCATCAAGCAGGACAGCCACTTTGATTAAGGTCGATAGTGCGAATAGGCGTGGGAGTTTGTTGGAGGTGGTTCAGGTTCTGAATGATATGGATCTTATTATTAGAAGAGCTTACATTTCTTCAGATGGGGAATGGTTTATGGACGTATTTCATGTGACAGATCAAAAAGGCAATAAGCTCTCTGAAGATGATGTTGCTGAAAGAATTCAACAGTCACTCGGACCTAGAGCACGGAGCTTCCGTTCCTTGAGAAGGTCCGTGGGTGTCCAAGCTGCTAATGAACATACAACCATAGAATTGACAGGGCGAGACCGACCAGGCTTGCTTTCAGAGGTGTTTGCGGTTCTTGCTGACCTCAAATGCAATGTGGTAGCAGCAGAAGTTTGGACCCATAATTCAAGAATGGCATCGGTTGTTTACATCACTGATGATGAGACTGGATTGCCAATTGATGATCCTGATCGGCTTGTGAAGATCAAACAGCTTCTCCTTTATGTGCTAAAAGGAGATAGAGATAAGCGGAGTGCCAATACTGCTGTTTCAGTGGGTTCCACTAACACGCAGAGGAGGCTGCATCAAATGATGTATGCTGATCGTGATTATGATATGGATAGTGGTTCCACAAATGATCGGAGCAAACCCCTTGTAACCGTGGAGAATTTTGCAGATAAGGGCTACACTGTCGTGAACCTAAGGTGCCCAGACCGGCCTAAGCTTCTCTTTGATACCGTCTGCACATTGACTGATATGCAGTATGTGGTATTCCATGCAACTGTCATTGCTGAAGGACCAGAGGCTTATCAGGAATATTATATCAGGCATGTGGATGGGTGCCCCATCAGTTCTGAAGCAGAGCAGCAAAGGGTAATTCTTTGCCTCGAGGCTGCTATCAGGAGACGTACTTCTGAGGGTATAAGACTAGAACTCTGTAGTGAAGACAGAGTTGGACTACTCTCTGATGTAACTCGCATATTTAGAGAAAACGGTCTATCCGTCACTCGAGCTGAGGTCACTACCAGGGGTTCTCAAGCTGTGAATGCTTTCTATGTCACTGATTCATCAGGAAATCCAGTAAAGAGTGAAACAATTGAGGCAGTCCGCAAAGAGATTGGCCTGACAATACTTCGTGTTAAAGATGATGCCTACTCCAAATCTCCACCCCAGGAGAGTGGGAGGTTCTCGTTGGGTAATCTCTTCCGATCAAGATCAGAGAAGGTCCTTTACAACTTGGGCTTAATGAGGTCATATTCTTGA 1344 0.4531 MDCWSPSLTVDDEFEKLVIRMNPPRVTVDNASSRTATLIKVDSANRRGSLLEVVQVLNDMDLIIRRAYISSDGEWFMDVFHVTDQKGNKLSEDDVAERIQQSLGPRARSFRSLRRSVGVQAANEHTTIELTGRDRPGLLSEVFAVLADLKCNVVAAEVWTHNSRMASVVYITDDETGLPIDDPDRLVKIKQLLLYVLKGDRDKRSANTAVSVGSTNTQRRLHQMMYADRDYDMDSGSTNDRSKPLVTVENFADKGYTVVNLRCPDRPKLLFDTVCTLTDMQYVVFHATVIAEGPEAYQEYYIRHVDGCPISSEAEQQRVILCLEAAIRRRTSEGIRLELCSEDRVGLLSDVTRIFRENGLSVTRAEVTTRGSQAVNAFYVTDSSGNPVKSETIEAVRKEIGLTILRVKDDAYSKSPPQESGRFSLGNLFRSRSEKVLYNLGLMRSYS* 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1525 447 SUPERFAMILY ACT-like 34 105 IPR045865 -
Vvi1g1525 447 ProSiteProfiles ACT domain profile. 38 118 IPR002912 -
Vvi1g1525 447 ProSiteProfiles ACT domain profile. 127 204 IPR002912 -
Vvi1g1525 447 SUPERFAMILY ACT-like 123 182 IPR045865 -
Vvi1g1525 447 CDD ACT_ACR_3 256 330 - -
Vvi1g1525 447 PANTHER ACT DOMAIN-CONTAINING PROTEIN ACR4-RELATED 11 408 IPR040217 -
Vvi1g1525 447 CDD ACT_ACR_2 126 199 - -
Vvi1g1525 447 Gene3D - 333 409 - -
Vvi1g1525 447 Gene3D - 121 192 - -
Vvi1g1525 447 Pfam ACT domain 337 399 IPR002912 -
Vvi1g1525 447 Pfam ACT domain 126 175 IPR002912 -
Vvi1g1525 447 CDD ACT_ACR_4 334 405 - -
Vvi1g1525 447 SUPERFAMILY ACT-like 332 401 IPR045865 -
Vvi1g1525 447 ProSiteProfiles ACT domain profile. 336 415 IPR002912 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1525 Vvi-Chr1 21888386 21891049 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1525 - - vvi:100250497 880.167