Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1524 ATGGAACTCGACCATCTTCTTCACAAGGCCATCAACTTGGTGCTGACGCCTTTAGTTTTCGCCATTATATGTCTCATCCTACCCTTTCTCATCATTTTCCGACTGGTTGTTTCCATCTCCAGTCGCTTCTCCAGCGAGAACATGGCCAGAAAAGTTGTCCTCATCACCGGTGCTTCATCGGGAATCGGAGAGCATATGGCTTATGAATATGCGAAAATGGGAGCGTGTCTAGCGCTAGTTGCGAGAAGGAAGGAGAAGCTGGAAGCGGTTGCAGCCAGGGCTCGTGGCCTCGGCTCTCCTGATGTTCTTGCGCTTCGTGCCGATGTATCAAATGTTAATGACTGCAAGCGATCTATTGATGATACTATCAACCACTTTGGTAAACTGAATCATTTGGTGAACAATGCCGGGATTGGAAGTGTCTGTGCACTTGAAGAGATCACCGATATTACCAACTCAGGATCTTTGATGGATGTGAACTACTGGGGTTCTGTTTATCCAACTTACTTTGCAATTCCTCACCTGAGAAAGACTAAGGGCAAGATTGTTGTCAACTCATCTACTAGTGCCCTTGTGCAGCCTCCATCAATGAGCTTCTATACTTCGAGCAAAGCGGCGGTGATAGGCTTCTTTGAGTCCTTGAGAGGTGAATTAGATCCTGAGGTGACAGTATCGATAGTAACTCTCGGCTTTGTAGAGAGTGAGATGACCGAAGGGAAGCTCGTATCCGGGAATGGAGAAGTCATAGTAGCACCAAACCTGATAAAAGCTATTAGTCCTACAGGTCTGCCGAAAATGAGAGCGGGTCTAGCTGCAAAGGTGATTGTAGATGCCATATGCCGTGGAGAAAGATATGTGACTGAGCCAAAGTGGTATAGGATGCTTACGTTATTCAAATACTTATGCCCTGAAGTGATTGAATGGCATTTCCGCCAGACCAAATTTGGGAAGGTGAAAGAAGCTCCCTCCAACCATATTCCCTCTAAAGCCGACTAG 996 0.4649 MELDHLLHKAINLVLTPLVFAIICLILPFLIIFRLVVSISSRFSSENMARKVVLITGASSGIGEHMAYEYAKMGACLALVARRKEKLEAVAARARGLGSPDVLALRADVSNVNDCKRSIDDTINHFGKLNHLVNNAGIGSVCALEEITDITNSGSLMDVNYWGSVYPTYFAIPHLRKTKGKIVVNSSTSALVQPPSMSFYTSSKAAVIGFFESLRGELDPEVTVSIVTLGFVESEMTEGKLVSGNGEVIVAPNLIKAISPTGLPKMRAGLAAKVIVDAICRGERYVTEPKWYRMLTLFKYLCPEVIEWHFRQTKFGKVKEAPSNHIPSKAD* 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1524 331 Gene3D - 34 319 - -
Vvi1g1524 331 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 127 138 IPR002347 -
Vvi1g1524 331 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 180 188 IPR002347 -
Vvi1g1524 331 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 200 219 IPR002347 -
Vvi1g1524 331 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 46 312 IPR036291 -
Vvi1g1524 331 PRINTS Glucose/ribitol dehydrogenase family signature 220 237 IPR002347 -
Vvi1g1524 331 PRINTS Glucose/ribitol dehydrogenase family signature 174 190 IPR002347 -
Vvi1g1524 331 PRINTS Glucose/ribitol dehydrogenase family signature 200 219 IPR002347 -
Vvi1g1524 331 PRINTS Glucose/ribitol dehydrogenase family signature 127 138 IPR002347 -
Vvi1g1524 331 PRINTS Glucose/ribitol dehydrogenase family signature 52 69 IPR002347 -
Vvi1g1524 331 Pfam short chain dehydrogenase 51 238 IPR002347 -
Vvi1g1524 331 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 187 215 IPR020904 GO:0016491
Vvi1g1524 331 PANTHER RETINOL DEHYDROGENASE-RELATED 48 315 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1524 Vvi-Chr1 21872667 21876065 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1524 39 177 Acyl Lipid Metabolism Gene Families AT3G12800 32.624 9.97e-15 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1524 K22418 - vvi:100854734 640.958