Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1523 ATGGACTTGAACTATCTGATTCACAAATCAATGAGTTTAGTCATCATCCCTCTAGTTTTGGTCTCTCTATGTTGGATCTTACCTCTTCTCTTCCTTTTCAGGCTCATCTTTTCCTTCTTCCAATTCTTCTCCCAAGAGAACATGGCGGGAAAAGTCGTCCTCATCACAGGCGCCTCCTCAGGAATCGGAGAGCAAATGGCTTACGAATATGCAAAGAAAGGAGCTTGTTTAGTGATAGTTGCGAGAAGGAAGAAGAAGCTAGAGGAGGTGGCAGCACAGGCTCGGGAGCTCGGCTCCCCTGATGTTGTTGTTGTTTGCGGTGATGTTTCTAATATCAATGAATGCAAGCAATTTATTGATGAAGCTATCCACCACTTTGGTAGATTGGATCATCTGGTGAATAATGCTGGAGTTACTGGCGGCTACCCATTTGAAGAGATCACAGATATTACAAAATTTGCACTTCTAATGGATGTGAATTTCTGGGGCACTGTTTATCCAACTTATTTTGCAATTCCTCACCTCAGGAAGACCAAGGGCAAGATTTTTGTTAACTCATCTTCTTGTGCATTTCTGCAGCCACCAAGATTGAGTTTCTACAGTGCAAGTAAAGCAGCATTAATAGGCTTCTTTGAGGCACTGAGAATTGAGCTGGCTCCTTCAGTCACCATAACAATTGCCACTCTTGGTATAATAGATTCCGAGATGTCCCGGGGAAAAATCTTATCCAAGGATGGAGAACTCATACTATCCCCAGAAAACAGCAAAGGTGTTTTTGAGGGATTCCCAGTGATGAACACTGAGCCAGCTACTAAGTCCATTGTCGATAGTATCTGCCGAGGAGAAAGGTATGTGACTGAGCCACAATGGTACGGAGCGATCCATCTGCTCAAAGATTTATGCCCAGAAATGGTGGAATGGTACTATAGCATCATGTACTTTAAGAAGAAATCGAGCCTATTTGCAGAAAAAGCAGACTGA 981 0.4312 MDLNYLIHKSMSLVIIPLVLVSLCWILPLLFLFRLIFSFFQFFSQENMAGKVVLITGASSGIGEQMAYEYAKKGACLVIVARRKKKLEEVAAQARELGSPDVVVVCGDVSNINECKQFIDEAIHHFGRLDHLVNNAGVTGGYPFEEITDITKFALLMDVNFWGTVYPTYFAIPHLRKTKGKIFVNSSSCAFLQPPRLSFYSASKAALIGFFEALRIELAPSVTITIATLGIIDSEMSRGKILSKDGELILSPENSKGVFEGFPVMNTEPATKSIVDSICRGERYVTEPQWYGAIHLLKDLCPEMVEWYYSIMYFKKKSSLFAEKAD* 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1523 326 Gene3D - 39 320 - -
Vvi1g1523 326 Pfam short chain dehydrogenase 51 238 IPR002347 -
Vvi1g1523 326 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 187 215 IPR020904 GO:0016491
Vvi1g1523 326 PANTHER RETINOL DEHYDROGENASE-RELATED 48 314 - -
Vvi1g1523 326 SMART This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 51 235 - -
Vvi1g1523 326 PRINTS Glucose/ribitol dehydrogenase family signature 52 69 IPR002347 -
Vvi1g1523 326 PRINTS Glucose/ribitol dehydrogenase family signature 220 237 IPR002347 -
Vvi1g1523 326 PRINTS Glucose/ribitol dehydrogenase family signature 200 219 IPR002347 -
Vvi1g1523 326 PRINTS Glucose/ribitol dehydrogenase family signature 127 138 IPR002347 -
Vvi1g1523 326 PRINTS Glucose/ribitol dehydrogenase family signature 174 190 IPR002347 -
Vvi1g1523 326 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 45 316 IPR036291 -
Vvi1g1523 326 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 127 138 IPR002347 -
Vvi1g1523 326 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 200 219 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1523 Vvi-Chr1 21864353 21867213 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1523 18 221 Lipid Metabolism Gene Families AT1G67730 32.093 3.86e-16 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1523 K22418 - vvi:100245367 608.986