Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1519 ATGCACTGTGAAGGATGTGCAAACAAGGTTTTGAAAAGCCTGAGAGGTTTTGATGGAGTTGAAGAAGTTGAGACAGATCGTAAGAATCATAAAGTGATAGTGAAGGGAGAAAAGGCTGATCCATTGAAGGTTTTGGAGAGGGTTAAGAAGAAATGTGGGAAAAATGTAGAGCTTCTCTCCCCCATTCCCAAAGCCAAAGAGCCTCAAGAGAATAAGAAAGAAGCGAAAGAAGAGCCTAGAGTGATGATTGTGGTGCTTAAGGTGTATATGCACTGTGAGAATTGTGCGGTAGAAATCAAGAAAGCTATATTGAAAATGAAAGGAGTTCGAACAGTGGAGCCAGATACAAAAAACTCGACTGTGACAGTGAAAGGAGTGTTTGATCCACCAAAGCTGATTGATCATCTCCATAATCGAGCAGGAAAACATGCAGTAATCTTAAAGCAAAATGAAGAGAAGAAGCAGAAGAAACAAGAAGTGAAGGAGATGAGGGAGACCGACAAGAAAAGTGATATAAAAGAGGGAATCGAAGAGCAGTGGGGAAATGAAATTGATTCCGACTTTTTCTATTATAATTCTCAATATCCTTATCAACATTTATACCCTTATCAATTTTTTAGTGAGGAAAATACTAATGCTTGTTCGATATTGTGA 654 0.3853 MHCEGCANKVLKSLRGFDGVEEVETDRKNHKVIVKGEKADPLKVLERVKKKCGKNVELLSPIPKAKEPQENKKEAKEEPRVMIVVLKVYMHCENCAVEIKKAILKMKGVRTVEPDTKNSTVTVKGVFDPPKLIDHLHNRAGKHAVILKQNEEKKQKKQEVKEMRETDKKSDIKEGIEEQWGNEIDSDFFYYNSQYPYQHLYPYQFFSEENTNACSIL* 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1519 217 CDD HMA 1 57 IPR006121 GO:0046872
Vvi1g1519 217 SUPERFAMILY HMA, heavy metal-associated domain 81 145 IPR036163 GO:0046872
Vvi1g1519 217 ProSiteProfiles Heavy-metal-associated domain profile. 81 145 IPR006121 GO:0046872
Vvi1g1519 217 CDD HMA 90 144 IPR006121 GO:0046872
Vvi1g1519 217 Gene3D - 80 147 - -
Vvi1g1519 217 SUPERFAMILY HMA, heavy metal-associated domain 1 58 IPR036163 GO:0046872
Vvi1g1519 217 MobiDBLite consensus disorder prediction 151 170 - -
Vvi1g1519 217 Coils Coil 146 166 - -
Vvi1g1519 217 ProSiteProfiles Heavy-metal-associated domain profile. 1 57 IPR006121 GO:0046872
Vvi1g1519 217 Pfam Heavy-metal-associated domain 1 54 IPR006121 GO:0046872
Vvi1g1519 217 Pfam Heavy-metal-associated domain 87 143 IPR006121 GO:0046872
Vvi1g1519 217 Gene3D - 1 66 - -
Vvi1g1519 217 PANTHER HEAVY METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 7 1 216 IPR044577 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1519 Vvi-Chr1 21774426 21777127 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1519 - - vri:117921255 419.853