Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1516 ATGAACAAGGATTTGTTAAGCTATTGTGAAAAAGAAATCCAGGATCTCATAGATAAGAAGTTGATAAGGAAGTCTAAATCTCCTTGGAGTTGTTCAGCTTTTTATGTTCAGAAACAAGCAGAACTTGAAAGAGGAACACCTAGACTAGTTATCAACTATAAGCCCCTCAATGATGTTTTAAGATGGATCAGGTATCCTATCCCAAATAAAAAAGACCTCCTTCAAAGATTAGGAAAGTCCAAAGTTTTCTCCAAGTTTGACATGAAATCAGGATTTTGGCAAATACAGATAGCAGAAAAAGATAGGTACAAAACAGCCTTTGTGGTCCCATTTGGTCATTACGAGTGGAATGTAATGCCCTTTGGCCTTAAGAATGCTCCTTCTGAGTTTCAAAACATAATGAATGAAATCTTTAACCAGTTTTCTGATTTCATTATTGTTTACATTGATGATGTTTTGATTTACTCAGATTCTGTTGAGCAGCATTGGAAACATCTCAATAGGTTTATTGAGACTGTTAAGAGCAATGGTTTAAGCTTGTCAGCCACTAAGATCAACCTCTTTCAAACTAAAGTAAGATTCCTAGGTCATCATATTCACCAAGGAACATTCACCCCCATTCAAAGGTCAATTGAGTTTGCTGATAAGTTCCCTGATGAAATTAAGGATAAGAAACAATTGCAACGTTTCTTAGGAAGCCTTAATTATGTGTCAGATTTCATACAAGATTTAAGCCAATTATGTGCCCCTTTAAGACAAAGACTTAAGAAAAATCCAGTTCCTTGGAATGAGGATCATACCAAGATTGTTAAAATAGTAAAGTCTAGAGTCAAAACTCTACCATGTCTCGCCTTAGCTGATCATAAAGCCTTTAAGATTGTTGAGACTGATGCTTCTGATATAGGTTTTGGTGGAATTCTTAAGCAAAGAAGTAATAACCAAGAATTGTTGGTTAGATTCACTTCTGGAACCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAATGGGGAAGTTTTAATCCTAACTCCTGAAAAACTTCTTGATTATGGTTTGGTTTACCAACTTATCTGTTCTGATCCAAGTCAAGCTAGCAATTTTGGCAGAAAGGTTAATCTAAGCTTAACCCAAGGTTTTAAGCTAAACAAGAAGTTTACTGATGCCATTTTTATTAGCAAAGCACCTGAATGGATTTCTAGAGGCAATGTTATTCCAGCACAACACTATGTTAATATTCACTACCAGAATAGAAGACCTACTCTTCTGTCCAGTCCCTTAGTTCAATCCGACATTTGCGGAGAACCAATTATTAAGCAAATCAAGCATTGGAGAGCCAGAGTCATCAGCAGAGACTTTGAAGCCTACCCAAATAACATGGGGCATCTCATTGCTGCAGATTCCCTACATCAGATATTTTGCAGCAAAAAGATTGATCCTTTACCGTTCAAATCCACTATTCAAGATACTCAACTCCTAATGGATCACCGCTCGGAATATATTCCTCCCTGA 2640 0.2045 MNKDLLSYCEKEIQDLIDKKLIRKSKSPWSCSAFYVQKQAELERGTPRLVINYKPLNDVLRWIRYPIPNKKDLLQRLGKSKVFSKFDMKSGFWQIQIAEKDRYKTAFVVPFGHYEWNVMPFGLKNAPSEFQNIMNEIFNQFSDFIIVYIDDVLIYSDSVEQHWKHLNRFIETVKSNGLSLSATKINLFQTKVRFLGHHIHQGTFTPIQRSIEFADKFPDEIKDKKQLQRFLGSLNYVSDFIQDLSQLCAPLRQRLKKNPVPWNEDHTKIVKIVKSRVKTLPCLALADHKAFKIVETDASDIGFGGILKQRSNNQELLVRFTSGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGEVLILTPEKLLDYGLVYQLICSDPSQASNFGRKVNLSLTQGFKLNKKFTDAIFISKAPEWISRGNVIPAQHYVNIHYQNRRPTLLSSPLVQSDICGEPIIKQIKHWRARVISRDFEAYPNNMGHLIAADSLHQIFCSKKIDPLPFKSTIQDTQLLMDHRSEYIPP* 880
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1516 879 Pfam Reverse transcriptase (RNA-dependent DNA polymerase) 46 199 IPR000477 -
Vvi1g1516 879 SUPERFAMILY DNA/RNA polymerases 2 325 IPR043502 -
Vvi1g1516 879 FunFam Retrovirus-related Pol polyprotein from transposon 17.6-like Protein 93 125 - -
Vvi1g1516 879 Pfam RNase H-like domain found in reverse transcriptase 262 324 IPR041577 -
Vvi1g1516 879 PANTHER POL PROTEIN 7 323 - -
Vvi1g1516 879 Coils Coil 713 713 - -
Vvi1g1516 879 ProSiteProfiles Reverse transcriptase (RT) catalytic domain profile. 17 199 IPR000477 -
Vvi1g1516 879 Gene3D HIV Type 1 Reverse Transcriptase, subunit A, domain 1 6 125 - -
Vvi1g1516 879 Gene3D - 65 199 IPR043128 -
Vvi1g1516 879 CDD RT_LTR 20 199 - -
Vvi1g1516 879 Gene3D - 214 297 IPR043128 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1516 Vvi-Chr1 21747587 21750226 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1516 - - brp:117131412 481.485