Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1510 ATGGCAGGTCTTCCACTACCGCCTCCAAACCCTCCACCATTATCAACTCGCAATCAGACTTCAACTTCAAGCTCCGCGAACTTCGCTCAAATTCCTTCATGGGTATCGCTGAAACGCAGTTCTTCTACGATCAAAACCGAGAAAATCCAACAAGGGAAGCTCGAGAATTTACATTTGGTTTCACTTTCCAAACAAGGGAAGCTCAAGGAAGCCCATGATTTTCTCAAAGAAATGGACGATGCTGATGTTTCTGTCACTCCACACTCGTATCAATGCCTATTTGAAGCATGTGGGAAGTTGAGATCCTTGGCTGATGGAAGATTAATTCACGATCGGCTGCGAAGAACAGTGAAGAACCCATCTGGGTCTATTGAGAATTGTCTTCTGAGAATGTACTGTGATTGTGGGAGTTGCATAGATGTACAGAAAGTGTTCGATGAAATGCTTATGAAAAACTTGGTGTCTTGGGTTATAGTCATATCTGCTTATGCCAAGAATGGAGAATTGGAGAAAGCTATTAGGTTGTTTTCTGATATGCAGGCATCGGGAATTAGACCGAACTCTGCTGTCTATATGAGCCTCTTGCAGTCTTGCTTGGGTCCTTCATTTCTAGAGCTTGGTAAACAGATACATTCCCATGTGATTAGAGCTCAGTTGAATGCCAATATTACAGTGGAAACAGCCATATGCAACATGTATGTGAGATGTGGGTGGTTAGAGGGGGCCAAGCTTGTTTTTGATGGGATGGATGCACAGAATGCTGTGACTTGGACTGGGTTGATGGTGGGTTACACTCAAGCCAAGAAGCTGGAGGTTGCTTTGGAACTGTTTGCTAGGATGGCAATGGAAGGCGTGGAATTGGATGAGTTTGTATTCTCTATTGTTCTCAAGGTGTGTTGCGGGCTGGAGGATTGGGATATGGGGAGGCAGATTCATAGTCACATTGTTAAACTTGGGGCCGAATCAGAAGTTTCAGTGGGGACTCCTCTTGTGGACTTCTATGTCAAATGTGGAGATATAGAATCTGCATATCGATCATTTGGGAGGATATCTGAACCAAATGATGTTTCATGGAGTGCTCTAATTTCGGGTTTTTCCCAATCTGGTAGGTTGGAGGATTGTATTAAGATCTTTACGTCTTTGAGGAGTGAAGGCGTGGTTTTAAATTCTTTCATATACACCAGTGTTTTTCAAGCCTGTGCGGCACAAGCAAACTTGAACATGGGCAGCCAAGCTCATGGGGATGCAATAAAAAGAGGTCTTGTTTCATACCTATATGGAGAGAGTGCAATGGTTACTATGTATTCAAAATGTGGGAGACTAGACTATGCTCGTCGGGCCTTTGAATCGATAGATGAGCCTGATGCTGTGGCTTGGACTGCTATAATTTCAGGTTATGCCTATCATGGCAATGCTGCAGAAGCTCTAGGGTTTTTCAGGAGGATGCAGAGTTATGGTGTTAGGCCAAATGCAGTTACCTTCATAGCAGTTTTAACTGCTTGTAGCCATTCGGGTTTAGTTGCAGAGGCCAAGCAGTACCTCGGCTCAATGAGCAGGGACTATGGTGTGAAGCCAACGATTGATCACTATGATTGTATGATTGATACATACTCTCGTGCTGGGCTGCTCCAGGAGGCACTTGAATTGATAAACAGGATGCCATTTGAACCCGACGCCATGAGCTGGAAGAGCTTACTGGGTGGGTGTTGGGCTCATTGCGACCTCAAGCTTGGAAAGATTGCAGCAGAAAACCTTTTTCGGTTGGACCCAGGAGACACCGCTGGCTACATTCTCCTGTTCAACTTGTATTCTGCCTTTGGAAAATGGGAAGAAGCAGGCCATGTTCGGAAACTGATGGCTGAAAGAGAGTTGAAGAAGGAGGTCAGCTGCAGCTGGATCTCAGTAAAAGGTCAAGTACACCGGTTTGTAGTTGGTGACAGGCACCATCCACAAACAGAAGCCATCTACTCAAAGCTAGAGGAATTCAAATGTTCTGTTATTGACAGCCCGGTTCGGCTCCTGAATGAGGAAGATGACGTTTCTTGCAGTCTGTCTGCGCGGAAGGAGCAGCTTCTTGACCACAGTGAGAAACTGGCTATTGCATTTGGGCTAATATCTACAGAAGACAATGCCCCCATTCTAGTTTTCAAGAACCTCCGGGCTTGCAGAGATTGCCATGAGTTTGGAAAGCAGGTGTCCATGGTGACAGGACGCCAGATTGTGGTTAGAGATTCCACCAGATTCCATCACTTCAAATCTGGGAAATGTTCTTGCAATGACTATTGGTGA 2289 0.4522 MAGLPLPPPNPPPLSTRNQTSTSSSANFAQIPSWVSLKRSSSTIKTEKIQQGKLENLHLVSLSKQGKLKEAHDFLKEMDDADVSVTPHSYQCLFEACGKLRSLADGRLIHDRLRRTVKNPSGSIENCLLRMYCDCGSCIDVQKVFDEMLMKNLVSWVIVISAYAKNGELEKAIRLFSDMQASGIRPNSAVYMSLLQSCLGPSFLELGKQIHSHVIRAQLNANITVETAICNMYVRCGWLEGAKLVFDGMDAQNAVTWTGLMVGYTQAKKLEVALELFARMAMEGVELDEFVFSIVLKVCCGLEDWDMGRQIHSHIVKLGAESEVSVGTPLVDFYVKCGDIESAYRSFGRISEPNDVSWSALISGFSQSGRLEDCIKIFTSLRSEGVVLNSFIYTSVFQACAAQANLNMGSQAHGDAIKRGLVSYLYGESAMVTMYSKCGRLDYARRAFESIDEPDAVAWTAIISGYAYHGNAAEALGFFRRMQSYGVRPNAVTFIAVLTACSHSGLVAEAKQYLGSMSRDYGVKPTIDHYDCMIDTYSRAGLLQEALELINRMPFEPDAMSWKSLLGGCWAHCDLKLGKIAAENLFRLDPGDTAGYILLFNLYSAFGKWEEAGHVRKLMAERELKKEVSCSWISVKGQVHRFVVGDRHHPQTEAIYSKLEEFKCSVIDSPVRLLNEEDDVSCSLSARKEQLLDHSEKLAIAFGLISTEDNAPILVFKNLRACRDCHEFGKQVSMVTGRQIVVRDSTRFHHFKSGKCSCNDYW* 763
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1510 762 FunFam Pentatricopeptide repeat-containing protein, chloroplastic 56 205 - -
Vvi1g1510 762 MobiDBLite consensus disorder prediction 1 15 - -
Vvi1g1510 762 NCBIfam pentatricopeptide repeat 154 187 IPR002885 -
Vvi1g1510 762 NCBIfam pentatricopeptide repeat 255 289 IPR002885 -
Vvi1g1510 762 NCBIfam pentatricopeptide repeat 530 554 IPR002885 -
Vvi1g1510 762 NCBIfam pentatricopeptide repeat 356 389 IPR002885 -
Vvi1g1510 762 NCBIfam pentatricopeptide repeat 457 491 IPR002885 -
Vvi1g1510 762 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 152 186 IPR002885 -
Vvi1g1510 762 MobiDBLite consensus disorder prediction 1 27 - -
Vvi1g1510 762 Pfam E motif 572 633 IPR046848 -
Vvi1g1510 762 Pfam PPR repeat family 151 198 IPR002885 -
Vvi1g1510 762 Pfam PPR repeat family 253 300 IPR002885 -
Vvi1g1510 762 Pfam PPR repeat family 454 502 IPR002885 -
Vvi1g1510 762 FunFam Pentatricopeptide repeat-containing protein 425 619 - -
Vvi1g1510 762 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 354 388 IPR002885 -
Vvi1g1510 762 Pfam DYW family of nucleic acid deaminases 687 762 IPR032867 GO:0008270
Vvi1g1510 762 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 253 287 IPR002885 -
Vvi1g1510 762 Pfam PPR repeat 530 553 IPR002885 -
Vvi1g1510 762 Pfam PPR repeat 61 80 IPR002885 -
Vvi1g1510 762 Pfam PPR repeat 356 386 IPR002885 -
Vvi1g1510 762 Gene3D Tetratricopeptide repeat domain 203 303 IPR011990 GO:0005515
Vvi1g1510 762 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 455 489 IPR002885 -
Vvi1g1510 762 Gene3D Tetratricopeptide repeat domain 304 424 IPR011990 GO:0005515
Vvi1g1510 762 Gene3D Tetratricopeptide repeat domain 429 627 IPR011990 GO:0005515
Vvi1g1510 762 Gene3D Tetratricopeptide repeat domain 56 202 IPR011990 GO:0005515
Vvi1g1510 762 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 124 699 IPR046960 GO:0003723|GO:0009451
Vvi1g1510 762 FunFam Pentatricopeptide repeat-containing protein, chloroplastic 206 307 - -
Vvi1g1510 762 FunFam Pentatricopeptide repeat-containing protein, chloroplastic isoform A 308 422 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1510 Vvi-Chr1 21682875 21685163 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1510 88 762 Glycoside Hydrolase AT3G49170 37.700 3.33e-161 486
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1510 - - vvi:104880782 1526.92