Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1505 ATGCTTGTTGTTGGATCTAATCGATTTGTGTTGAACAACAATCTTAAAGAACAAGAAACCCTAAATAGGATGGGAATTGAAGATGTGGAGGAAGGTGAGATTTCTGATTCTGCTTCCGTAGAGGAGATCAGTGAGGAGGATTTTAATAAGCAGGAGGTTAGGGTTTTGAGAGAAGCGAAACCTAAGGCTGATACTAGGGTTTGGACGATGCGAGATCTGCAGGATCTGTATAAGTACCACCAGGCTTGCAGTGGTTACACTCCAAGATTGTACAATTTAGCCTGGGCACAGGCTGTTCAGAATAAACCTCTTAACGATATTTTTGTTATGGATGATGAGGAGTCGAAGCGATCTTCGTCGTCTTCGAACACTAGCAGAGATGACAGCAGTTCGGCGAAGGAGGTGGCTAAGGTGATAATTGATGATAGTGGCGACGAAATGGATGTGAAGATGGATGATGTGAGTGAGAAAGAGGAAGGTGAATTGGAGGAGGGTGAGATTGATTTGGATTCGGAGCCAGATGTGAAAGATGAAGGAGGGGTTTTGGATGTTAATGAGCCTGAGATTGACCTGAAAGAGAGGGAATTGGTGGAGCGAGTGAAATCAATTCAGGAAGATCTTGAAAGTGTAACTGTGATTGAAGCGGAGAAATCATTTTCTGGGGTATGTTCCCGACTGCAGAACACTTTGGGAAGTTTGCAGAAAGTGTTTGGGGAGAAAGTGGTTGGGGAGAGCAGTGTTCCAACTAAAGATGCTCTCGCTCAACAATTGATTAATGCAATTCGAGCTCTTAATCATGTATTTTGTTCCATGAATTCTAACCAAAAGGAACTGAACAAGGATGTTTTCTCAAGGTTGCTTTCTTGTGTAGAGTGTGGAGATTCTCCTATTTTCTCCATTCAGCACATTAAAGAGGTAGAGGTCATGATGTCCTTTTTGGATACTCCTGCGGCTCAGTCAAGTGCTGAAGCTAGTGATAAGGTTAATGACGTCCAGGTCACTGATGGAATGAATCGGAACATTCTTGATAGTTCAGTTGAAAGTTCTGGGCGTGCTTTTGCTTCTGCAAAGAAATTGTCATTAGATTCCATATCTGTTGAATCTTATAATCAAAATAACCCAGATGCTTTGAAACCAGGACTATCTAGCAGTAGGGGGAGATTTATTTTTGGTCCCCTTCTAGATCTTCACAAAGATCATGATGAAGACAGCCTTCCATCACCCACTGGGAAAGCCCCACAATGTTTTCCTGTAAACAAGTCAGAATTGGTCACAGCTAAAGTGGCACATGAGACGCAAGATTCTATAATGCATCCTTATGAAACTGATGCTCTCAAAGCTGTTTCTACCTATCAACAGAAATTTGGGTTGACTTCATTCCTCCCAATTGACAAACTTCCTAGCCCAACCCCTTCAGAAGAATCTGGTGATACATATGGTGATATCAGTGGAGAGGTTTCTAGTTCTTCGACTATTAGTGCTCCCATAACTGCAAATGCACCTGCATTGGGTCATCCTATTGTCTCTTCTGCTCCTCAGATGGATAGTTCCATTGTTCAAGGACCGACTGTTGGTAGGAACACTTCACTTGTGAGTTCTGGCCCCCACCTGGATAGTTCAGTTGTGCAAGGACTAGTTGTCCCACGGAATACTGGAGCTGTGAATTCTAGGTTTAATTCCATTTTAAGAGCATCAGCAAAGAGTAGAGACCCTAGGCTTCGATTGGCGAGTTCTGATGCTGGATCTTTGGATCTCAATGAACGTCCCTTGCCTGCTGTGAGCAATTCTCCTAAAGTGGATCCCTTGGGAGAAATTGTAAGCTCAAGAAAGCAGAAATCTGCTGAGGAACCTCTTTTGGATGGTCCTGTAACAAAAAGGCAAAGAAATGGGTTGACAAGCCCTGCAACTGTTAGAGATGCACAAACTGTGGTTGCAAGTGGAGGCTGGTTAGAGGATAGCAATACTGTTATACCTCAGATGATGAACAGGAACCAGTTGATAGAGAACACTGGAACAGATCCTAAGAAATTGGAAAGTAAAGTGACTGTCACTGGTATTGGTTGTGATAAACCTTATGTAACAGTTAATGGAAATGAGCATTTGCCAGTGGTTGCTACTAGCACCACTGCTTCCTTGCAGTCTTTATTGAAAGATATTGCTGTGAATCCAGCCGTGTGGATGAATATATTTAATAAGGTGGAGCAACAGAAATCTGGTGACCCTGCAAAAAATACAGTGCTTCCTCCAACCTCAAATTCAATACTGGGAGTAGTTCCACCCGCAAGTGTTGCTCCACTAAAGCCATCAGCCCTTGGGCAGAAACCAGCAGGCGCACTTCAGGTTCCTCAAACTGGTCCAATGAATCCACAGGATGAGTCAGGAAAAGTCCGCATGAAACCTCGCGATCCTCGCCGTATTCTTCATGCCAATTCGTTTCAGAGGAGTGGGAGTTCTGGATCTGAGCAGTTCAAAACAAATGCCCAGAAGCAAGAGGATCAAACAGAGACGAAGTCTGTGCCTTCTCATTCTGTTAATCCCCCAGATATTTCTCAGCAATTCACCAAGAATCTGAAAAACATTGCTGATCTAATGTCTGCTTCCCAAGCATCGTCAATGACTCCAACTTTTCCGCAGATTCTTTCTTCCCAGTCAGTTCAAGTGAACACAGATAGGATGGATGTAAAAGCTACAGTTTCAGATTCTGGTGACCAGCTAACTGCAAATGGTTCGAAGCCTGAAAGTGCAGCAGGTCCCCCTCAATCAAAGAATACATGGGGGGATGTTGAACATCTATTTGATGGATATGATGACCAGCAAAAAGCTGCCATCCAGAGAGAGAGAGCAAGGAGGATAGAAGAACAGAAGAAAATGTTTTCTGCGCGCAAGCTCTGCCTCGTCTTGGATCTAGATCACACACTCCTTAATTCAGCCAAGTTTGTCGAAGTAGATCCAGTGCATGATGAGATCCTAAGAAAGAAGGAGGAACAGGATCGGGAGAAGTCACAGAGGCATCTCTTCCGTTTTCCTCATATGGGAATGTGGACCAAATTAAGGCCAGGGATCTGGAATTTCTTGGAGAAGGCTAGTAAGCTTTATGAGCTGCATCTTTACACAATGGGGAACAAGTTATATGCTACAGAGATGGCAAAAGTTCTTGATCCAAAAGGGGTTTTATTCGCTGGACGAGTGATCTCTAAGGGTGATGATGGGGATGTTTTAGATGGTGATGAGCGAGTCCCTAAGAGTAAGGATTTGGAAGGGGTATTGGGTATGGAATCAGCTGTGGTGATCATAGATGATTCTGTGAGAGTCTGGCCACATAACAAATTAAACTTGATAGTTGTGGAAAGGTACACTTATTTTCCATGTAGTAGACGCCAATTTGGGCTTCCTGGCCCGTCTCTTCTTGAGATTGATCACGATGAGAGACCAGAAGATGGGACTTTGGCATCCTCTTTGGCGGTTATTGAGAGGATACATCAGAGCTTTTTCTCTAATCGAGCCTTGGATGAGGTGGATGTCAGAAACATCCTAGCCTCAGAGCAGCGTAAAATTCTTGCTGGTTGTCGTATAGTCTTCAGCAGGGTGTTTCCTGTTGGGGAAGCCAACCCTCACCTACATCCTTTGTGGCAGACAGCTGAATCTTTTGGTGCCGTGTGCACCAACCAAATAGACGAACAGGTTACTCATGTAGTTGCCAATTCTCTTGGAACAGATAAGGTGAATTGGGCTCTTTCCACTGGAAGATTTGTGGTGCACCCTGGCTGGGTGGAAGCATCGGCTTTGCTATATCGAAGGGCCAATGAGCAAGATTTTGCCATTAAACCATAA 3831 0.4398 MLVVGSNRFVLNNNLKEQETLNRMGIEDVEEGEISDSASVEEISEEDFNKQEVRVLREAKPKADTRVWTMRDLQDLYKYHQACSGYTPRLYNLAWAQAVQNKPLNDIFVMDDEESKRSSSSSNTSRDDSSSAKEVAKVIIDDSGDEMDVKMDDVSEKEEGELEEGEIDLDSEPDVKDEGGVLDVNEPEIDLKERELVERVKSIQEDLESVTVIEAEKSFSGVCSRLQNTLGSLQKVFGEKVVGESSVPTKDALAQQLINAIRALNHVFCSMNSNQKELNKDVFSRLLSCVECGDSPIFSIQHIKEVEVMMSFLDTPAAQSSAEASDKVNDVQVTDGMNRNILDSSVESSGRAFASAKKLSLDSISVESYNQNNPDALKPGLSSSRGRFIFGPLLDLHKDHDEDSLPSPTGKAPQCFPVNKSELVTAKVAHETQDSIMHPYETDALKAVSTYQQKFGLTSFLPIDKLPSPTPSEESGDTYGDISGEVSSSSTISAPITANAPALGHPIVSSAPQMDSSIVQGPTVGRNTSLVSSGPHLDSSVVQGLVVPRNTGAVNSRFNSILRASAKSRDPRLRLASSDAGSLDLNERPLPAVSNSPKVDPLGEIVSSRKQKSAEEPLLDGPVTKRQRNGLTSPATVRDAQTVVASGGWLEDSNTVIPQMMNRNQLIENTGTDPKKLESKVTVTGIGCDKPYVTVNGNEHLPVVATSTTASLQSLLKDIAVNPAVWMNIFNKVEQQKSGDPAKNTVLPPTSNSILGVVPPASVAPLKPSALGQKPAGALQVPQTGPMNPQDESGKVRMKPRDPRRILHANSFQRSGSSGSEQFKTNAQKQEDQTETKSVPSHSVNPPDISQQFTKNLKNIADLMSASQASSMTPTFPQILSSQSVQVNTDRMDVKATVSDSGDQLTANGSKPESAAGPPQSKNTWGDVEHLFDGYDDQQKAAIQRERARRIEEQKKMFSARKLCLVLDLDHTLLNSAKFVEVDPVHDEILRKKEEQDREKSQRHLFRFPHMGMWTKLRPGIWNFLEKASKLYELHLYTMGNKLYATEMAKVLDPKGVLFAGRVISKGDDGDVLDGDERVPKSKDLEGVLGMESAVVIIDDSVRVWPHNKLNLIVVERYTYFPCSRRQFGLPGPSLLEIDHDERPEDGTLASSLAVIERIHQSFFSNRALDEVDVRNILASEQRKILAGCRIVFSRVFPVGEANPHLHPLWQTAESFGAVCTNQIDEQVTHVVANSLGTDKVNWALSTGRFVVHPGWVEASALLYRRANEQDFAIKP* 1277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1505 1276 SUPERFAMILY BRCT domain 1159 1275 IPR036420 -
Vvi1g1505 1276 MobiDBLite consensus disorder prediction 567 637 - -
Vvi1g1505 1276 ProSiteProfiles FCP1 homology domain profile. 958 1138 IPR004274 -
Vvi1g1505 1276 MobiDBLite consensus disorder prediction 130 156 - -
Vvi1g1505 1276 MobiDBLite consensus disorder prediction 112 181 - -
Vvi1g1505 1276 Pfam NLI interacting factor-like phosphatase 963 1119 IPR004274 -
Vvi1g1505 1276 MobiDBLite consensus disorder prediction 794 808 - -
Vvi1g1505 1276 MobiDBLite consensus disorder prediction 897 928 - -
Vvi1g1505 1276 MobiDBLite consensus disorder prediction 157 173 - -
Vvi1g1505 1276 ProSiteProfiles BRCT domain profile. 1181 1274 IPR001357 -
Vvi1g1505 1276 CDD HAD_FCP1-like 962 1115 - -
Vvi1g1505 1276 FunFam RNA polymerase II C-terminal domain phosphatase-like 3 947 1184 - -
Vvi1g1505 1276 MobiDBLite consensus disorder prediction 897 921 - -
Vvi1g1505 1276 SMART BRCT_7 1183 1264 IPR001357 -
Vvi1g1505 1276 Gene3D - 947 1184 IPR023214 -
Vvi1g1505 1276 SMART forpap2 961 1125 IPR004274 -
Vvi1g1505 1276 MobiDBLite consensus disorder prediction 766 850 - -
Vvi1g1505 1276 CDD BRCT_CTDP1 1173 1269 - -
Vvi1g1505 1276 MobiDBLite consensus disorder prediction 465 490 - -
Vvi1g1505 1276 NCBIfam FCP1-like phosphatase, phosphatase domain 958 1121 IPR011947 GO:0004721|GO:0005634
Vvi1g1505 1276 MobiDBLite consensus disorder prediction 471 490 - -
Vvi1g1505 1276 Gene3D BRCT domain 1185 1274 IPR036420 -
Vvi1g1505 1276 SUPERFAMILY HAD-like 952 1125 IPR036412 -
Vvi1g1505 1276 MobiDBLite consensus disorder prediction 810 850 - -
Vvi1g1505 1276 PANTHER RNA POLYMERASE II CTD PHOSPHATASE 80 1275 IPR039189 GO:0008420
Vvi1g1505 1276 FunFam RNA polymerase II C-terminal domain phosphatase-like 3 1185 1274 - -
Vvi1g1505 1276 Pfam BRCA1 C Terminus (BRCT) domain 1183 1260 IPR001357 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1505 K18999 - vvi:100243734 2454.86