Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1504 ATGGCCGCTGTCTCTGCCACCTCTGTTACCTTCGGATCTTCATTGAAGCTCTTGAAGAGTCGCCAGATCACTGGAAAGGCCTCAAGTCTGAAGATGGTAACTGTAGGTTGGACAAAGAGTGGCTTCCCTTCGTTGAGAACTTCCCGCTTCCGTGTCTCTTGCTCGGCTAAGCCAGAGACAGTACAGAAAGTGTGTGAGATAGTAAAGAAACAACTTGCATTGCCTGCTGAGTCTGAACTCACCCCAGAGTCCAAGTTTGCTGCCCTTGGTGCTGATTCTCTTGACACAGTGGAGATAGTAATGAGTTTGGAGGAAGAGTTCGGGATCAGCGTGGAAGAGGAAAGCTCTCAGAACATAACAACAGTCCAAGAAGCAGCAGATTTGATAGAGAAGCTTGTCCAGAAGAACAGTGAAGCTTAG 420 0.481 MAAVSATSVTFGSSLKLLKSRQITGKASSLKMVTVGWTKSGFPSLRTSRFRVSCSAKPETVQKVCEIVKKQLALPAESELTPESKFAALGADSLDTVEIVMSLEEEFGISVEEESSQNITTVQEAADLIEKLVQKNSEA* 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1504 139 PANTHER ACYL CARRIER PROTEIN 1 137 IPR044813 GO:0000036|GO:0006633
Vvi1g1504 139 FunFam Acyl carrier protein 56 137 - -
Vvi1g1504 139 NCBIfam acyl carrier protein 59 131 IPR003231 GO:0006633
Vvi1g1504 139 ProSitePatterns Phosphopantetheine attachment site. 88 103 IPR006162 -
Vvi1g1504 139 SMART Phosphopantetheine attachment site 61 115 IPR020806 GO:0031177
Vvi1g1504 139 SUPERFAMILY ACP-like 58 136 IPR036736 -
Vvi1g1504 139 ProSiteProfiles Carrier protein (CP) domain profile. 58 133 IPR009081 -
Vvi1g1504 139 Pfam Phosphopantetheine attachment site 62 129 IPR009081 -
Vvi1g1504 139 Hamap Acyl carrier protein [acpP]. 59 133 IPR003231 GO:0006633
Vvi1g1504 139 Gene3D - 56 137 IPR036736 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1504 Vvi-Chr1 21612725 21615651 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1504 1 139 Acyl Lipid Metabolism Gene Families AT4G25050 54.967 6.41e-42 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1504 - - vvi:100253968 257.299