Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1503 ATGGCGATTGCTGTTCTTGGATTTTCCTGTAGAAGTTACCTCACTTTCCGTCGTCCTCTCGTCTACTGCGTTCACAAGGTTCGACACCGCAGCAATGTTGCAACTGTTGAATCGCCTCCTGAACCAGTGGGTGTTACGAAGGAAGAAGAACCTCATTGGGCTACTTCTGATGGAAGAGGTAATGGTGCTTCTAAGGCACCTGAATGGAAGAAGTTGAATTCTAAAGACCTCGGGATTAGGACGTCGATGATTGCAAAGCCCACAAGATATGTTTTAAATGGACTTAAAAAAAAAGGATATGAAGTGTACCTTGTTGGAGGTTGTGTACGGGACCTTATCCTGAAGAGAACTCCTAAAGACTTTGACATCATAACTTCAGCTGAACTTAAGGAGGTACTGAGAGCATTTCCCCGATGTGAAGTAGTTGGAAAGCGATTTCCCATATGCCATGTGCATGTCAATGATACCATTGTTGAGGTTTCAAGTTTTAGCACTTCTGGAAAGAGAACCGGTAGGAAACTTGATTATATTCTCAGAAGACCTCCTGATTGTGATGATCATGATTATATTCGCTGGAGGAATTGTCTACAGCGGGACTTTACTATTAATGGGTTGATGTTTGATCCTTACACAAAGATAGTGTATGACTATATGGGTGGGATGCAAGATATCAAAAAAGCTAAAGTACGGACTGTAATCCCTGCTAATATTTCTTTTGTGGAGGATTGCGCTCGCATTTTGCGTGGGGTTAGAATTGCAGCACGTTTAGGGTTTCGTTTCACTAAAGATATAGCTCATTCTGTAAGAGAGTTATCTTGCTCAGTGTTAAGACTTGATAAGGGAAGGATACTCATGGAAATGAATTACATGCTAGCTTATGGGTCCGCAGAAGCTTCCTTGAGGTTATTATGGAAATTTGGACTCCTGGAGATACTTCTACCCATACAAGCAGCATATCTTGTTTCCCAAGGTTTTCGAAGACGTGATCAGAGATCAAACATGCTTTTGTCTTTGTTTTCAAACCTGGATAGACTTGTGGCACCTGATCGGCCATGCCATAATAGCTTATGGATTGGTATGTTAGCATTTCATAAGGCCTTGGTTGACCAACCTCGGCACCCCATGGTTGTTGCAGCATTCAGCCTTGCTGTGCACAATGGTGGATCCTTGTCGGAAGCGGTGGAAATTGCAAGGAGAATCTCCCAACCTCATGACCAGAGCTTCAGTGAATTATTAGAACCTCAGGATCTAGACTCGGATGAATCCTTGATAGACGAGATCATGGATCTTGCAGCATCGGTGAAATCTGCATTGATGAAGATGACAGATGAACATTTTGTTTCCCAAGCAATGAGCAAATACCCACGAGCACCATACTCAGATCTGGTTTTTATCTCATTGGCATCATTCCTAAGAGCATCTAAGATCTTTCAGTGCGTACAAGGGGGTGCTGAGAAGGGATTCGTACCAAAACAAGGGAGTAGGATTGACTACGAATTCTTAGCATTGGGAAGCCTTCGTGAGGTTCGGCATGTGTTTGCAAGGATCGTTTTTGACACCGTTTACCCTCTAAGCCTCAACACAGAGGACAATTTTGTAAACCAAAATTCTTAG 1614 0.4287 MAIAVLGFSCRSYLTFRRPLVYCVHKVRHRSNVATVESPPEPVGVTKEEEPHWATSDGRGNGASKAPEWKKLNSKDLGIRTSMIAKPTRYVLNGLKKKGYEVYLVGGCVRDLILKRTPKDFDIITSAELKEVLRAFPRCEVVGKRFPICHVHVNDTIVEVSSFSTSGKRTGRKLDYILRRPPDCDDHDYIRWRNCLQRDFTINGLMFDPYTKIVYDYMGGMQDIKKAKVRTVIPANISFVEDCARILRGVRIAARLGFRFTKDIAHSVRELSCSVLRLDKGRILMEMNYMLAYGSAEASLRLLWKFGLLEILLPIQAAYLVSQGFRRRDQRSNMLLSLFSNLDRLVAPDRPCHNSLWIGMLAFHKALVDQPRHPMVVAAFSLAVHNGGSLSEAVEIARRISQPHDQSFSELLEPQDLDSDESLIDEIMDLAASVKSALMKMTDEHFVSQAMSKYPRAPYSDLVFISLASFLRASKIFQCVQGGAEKGFVPKQGSRIDYEFLALGSLREVRHVFARIVFDTVYPLSLNTEDNFVNQNS* 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1503 537 PANTHER POLYNUCLEOTIDE ADENYLYLTRANSFERASE FAMILY PROTEIN 34 528 - -
Vvi1g1503 537 CDD NT_ClassII-CCAase 86 226 IPR002646 GO:0003723|GO:0006396|GO:0016779
Vvi1g1503 537 MobiDBLite consensus disorder prediction 35 67 - -
Vvi1g1503 537 Pfam Poly A polymerase head domain 102 230 IPR002646 GO:0003723|GO:0006396|GO:0016779
Vvi1g1503 537 Pfam Probable RNA and SrmB- binding site of polymerase A 257 319 IPR032828 -
Vvi1g1503 537 Gene3D - 231 436 - -
Vvi1g1503 537 SUPERFAMILY Poly A polymerase C-terminal region-like 229 407 - -
Vvi1g1503 537 Gene3D Beta Polymerase, domain 2 83 230 IPR043519 -
Vvi1g1503 537 SUPERFAMILY Nucleotidyltransferase 77 226 IPR043519 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1503 Vvi-Chr1 21601583 21610231 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1503 - - vvi:100259104 1075.85