Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1493 ATGAGGAATCATGGTTTTCAGCCGGATCATGTTACTTTTACTGGAGTTTTGGTGGCTTGCAGTCATGGAGGTCTTGTCAGTGAGGGGTGGCATGTCTTTGAAAGCATTAGGAATGAATATGGCATGGAACCATTGCCTGAGCATTATGGTTGTATGGTTGATCTCCTTGGCCGTGCAGGCTTGCTTAATGAAGCCTGCAAATTTGTGGATGGAATGCCAATTAGGCCAAATTCCATCATTTGGAGGACTCTGCTTGGAGCATGTGTAAACCACAATTATATTGAGTTGGCAGAGAAAGTGAAGGAGAAGATCAATGAGCTTGATTCTTACCATGATGGTGATTATGTGCTTCTATCAAATGTGTATGGTGGAGTTGGTCGGTGGGCTGAGAAGGCTGGGGTGAGGAATTCAATGAGAGAGAAGAGAATCAGCAAGAAACCTGGCTGTAGTTTGATTAATGTGAACCATTTGATTCATGAGTTTGTTGCAGGAGATAATAATCATCCCCAGTTTGAGAGTATTAGGGAGTTCTTGGTTTCAATGATTGATAGTTTGAAAGTTGTGGGTTATACTCCTGATATATCAAATGTATTGTTTGACATCGAAGAAGAGGAGAAGGAGAGTACTCTTGGTTACCATAGTGAGAAGTTGGCTGTTGCCTTTGCCCTCCTTTGTTTTAAGGACAGTAGGACCATTAGGGTCATGAAGAATCTTCGAATTTGTCATGATTGTCATTGTTTCATGAAGTATGCTTCAGATGTATTTGAAAGGGAGATCATCATCCGGGACAGAAACCGTTTCCATCATTTTAGTAAGGGATCATGCTCTTGCCGGGATTATTGGTGA 846 0.4173 MRNHGFQPDHVTFTGVLVACSHGGLVSEGWHVFESIRNEYGMEPLPEHYGCMVDLLGRAGLLNEACKFVDGMPIRPNSIIWRTLLGACVNHNYIELAEKVKEKINELDSYHDGDYVLLSNVYGGVGRWAEKAGVRNSMREKRISKKPGCSLINVNHLIHEFVAGDNNHPQFESIREFLVSMIDSLKVVGYTPDISNVLFDIEEEEKESTLGYHSEKLAVAFALLCFKDSRTIRVMKNLRICHDCHCFMKYASDVFEREIIIRDRNRFHHFSKGSCSCRDYW* 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1493 281 Pfam PPR repeat 48 72 IPR002885 -
Vvi1g1493 281 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1 218 IPR046960 GO:0003723|GO:0009451
Vvi1g1493 281 Pfam DYW family of nucleic acid deaminases 189 281 IPR032867 GO:0008270
Vvi1g1493 281 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 20 - -
Vvi1g1493 281 Pfam E motif 91 152 IPR046848 -
Vvi1g1493 281 FunFam Pentatricopeptide repeat-containing protein At1g22830 1 160 - -
Vvi1g1493 281 Gene3D Tetratricopeptide repeat domain 1 160 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1493 Vvi-Chr1 21487801 21488646 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1493 1 281 Glycoside Hydrolase AT3G49170 47.719 1.11e-83 266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1493 - - vvi:109121405 592.038