Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1476 ATGGATCCAGACGCCGTAGCAAAGGCCTTCGTGGAGCACTACTACTCCACCTTCGATGCCAATCGTGCCAACCTCGCTAACTTATATCAGGAGTCATCGATGTTGACTTTCGAAGGTCAGAAGATCCAAGGGTCACCTAACATCGTCGCTAAGCTCACCAGTCTTCCCTTCCAGCAGTGCCAGCACAGCATCACCACCGTCGATTGCCAGCCTTCCGGGCCCGCCGGTGGTATGCTCGTCTTCGTCTCCGGCAACCTCCAGCTGGCCGGCGAACAGCACGCCCTCAAGTTCAGCCAGAAAATATCTGGAAATGTCCAGCACCATGTCTATTTGATAAGATGTTTGCCTGTTCGAGTGCTCAGTTTTGTGCTGAGTTCTTTGATGAAGGAATCTCTTGCAAGTTTGAAAAGGACATTTCCTTTGTTCCCTTGGATATCTCTACATTTCTATTGGTTTACTTTTCTCAAGAGAAGTTCTATGTTCTTCAATCTTTAG 495 0.4869 MDPDAVAKAFVEHYYSTFDANRANLANLYQESSMLTFEGQKIQGSPNIVAKLTSLPFQQCQHSITTVDCQPSGPAGGMLVFVSGNLQLAGEQHALKFSQKISGNVQHHVYLIRCLPVRVLSFVLSSLMKESLASLKRTFPLFPWISLHFYWFTFLKRSSMFFNL* 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1476 164 CDD NTF2 2 99 IPR018222 -
Vvi1g1476 164 FunFam Nuclear transport factor 2 1 115 - -
Vvi1g1476 164 PANTHER NUCLEAR TRANSPORT FACTOR 2 2 108 IPR045875 GO:0006913
Vvi1g1476 164 ProSiteProfiles Nuclear transport factor 2 domain profile. 6 99 IPR018222 -
Vvi1g1476 164 Pfam Nuclear transport factor 2 (NTF2) domain 6 100 IPR002075 -
Vvi1g1476 164 Gene3D - 1 119 - -
Vvi1g1476 164 SUPERFAMILY NTF2-like 3 99 IPR032710 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1476 Vvi-Chr1 21171294 21173361 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1476 - - vvi:100252245 202.216