Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1466 ATGGCAGCGACACAACAAGGCCCTGATCGCCTCATCCCAACAGGTTTTGATAATGTCACTGGTAAATGGAATGAATATTCTTCATATGTTAATGCTGAAGGCTTGGAAATTAGATCTTCTGGCATGTACAATGAAAATCCATCTGTTGTATTTGATGGTAATGGGTATAATCCTCAAATGCCATATGGACCATATCCAGAGACAACACAGCTGGCTTCTGCAAGGGGAGATGGGAAGTTACATGCTGCACAGCAGTTCTCAATCTCTGATCCACTTTCCTACCAGCAACCCATTGCTCCGAACATTCCATATGTTACTTCATCAACTCCTGTTTCACAAACAGAGCTACCTTCGGAAATTGGTAAGCAAGGGGATTGCAAACCTTTTGGCTTGAATCTGGGTTACCCACCTTCATTGGGATCATTTGGTAGCAGAAGCAACTTTTCTGAAAATTCTGATGGGCTAGGTTTCATGTCGGATGGGTCTGATGTGTTTGGATTTGGTAGTCTCTGGTCAGATTGCTCAATCCCCTTGAAGGAGCGGTCTAAGTTGTCATCACCAGCAGCATCTCAGCAGCCAGTTGGTTCACTGAATATGTCCAGGACTGATTTTGGAATGGCTTCTCAACAACATGGATCGCTTTCCAGATTTGGATCTCAGTCAAGCTTGAACTACAGGGGCTACAGTAGCAGTGGAATAAACCAAAGCTCTAGTTTCAGAAATACTTCCATATCCACTACTTCTGCCATGAATGGTTGGAACTGGCTTCCATATGATAAAGCAAAAAGTGGAGGAAACAGTGACACTTCATTTGGATGTACTGGTACAATTGATACTTTAATTGAGCAAAATCGAGGGCCTAGGGCATCAAAGCCAAAAAACCGAACAACTGCTAATGAGTCTTTTGTTAATAATAGCAAGAATGGAACATGTACTGGAGTCCACCGTGAGTCTTACAACCGTCTGGATTTTGTCACTGAGTACAAAGATGCAAAATTCTTCGTGATCAAATCTTATAGTGAAGACAATGTCCACAAGAGCATTAAGTATGGCGTGTGGGTTAGCACCCCAAATGGCAACAAAAGATTAAATTCTGCCTTTCATGAAGCCAAGGAGAAACATGGAAACTGTCCAATCTTTCTTTTGTTTTCGGTGAATGCTAGTGCCCAGTTCTGTGGGGTGGCCGAGATGGTGGGGCCTGTAGATTATGATAAAAGTGTAGATTATTGGAAGCAGGATAAGTGGACGGGCCAATTCCCTGTTAAGTGGCATATTATTAAAGATGTACCCAACAGTCAATTTCGTCACATTATACTTGAAAATAATGACAACAAACCAGTTACCAACAGCAGAGACACTCAAGAGGTGGAATTGGAGCAGGGTAATGAAATGTTGAACATATTCAGGAATTACGAAAGTGATTCATCCATCCTAGATGATTTCGACTTCTATGAAGACAGGCAGAAAGCCATGCAGGAAAAGAAGACCCAACATAAAGCAAGCCTGTTGGCTGCTCCAATGGTTGTAGGCAGTCAGCAACAAATTCGCCGGTCTCTCCCAACTCACCTCATACATAAAATGTCAAAGACCTTTGCTCAAGCTGTGTTGTTGAATGAGAATGACAAGGAGCGGTCACCAGCAGGAAAGGCGGTGCCTGGTGCAGCTCGCTTGAGGGGAAGCAGAGTAGAACCCGAAAAAACAAGGGCAACAATGGCATGA 1719 0.4322 MAATQQGPDRLIPTGFDNVTGKWNEYSSYVNAEGLEIRSSGMYNENPSVVFDGNGYNPQMPYGPYPETTQLASARGDGKLHAAQQFSISDPLSYQQPIAPNIPYVTSSTPVSQTELPSEIGKQGDCKPFGLNLGYPPSLGSFGSRSNFSENSDGLGFMSDGSDVFGFGSLWSDCSIPLKERSKLSSPAASQQPVGSLNMSRTDFGMASQQHGSLSRFGSQSSLNYRGYSSSGINQSSSFRNTSISTTSAMNGWNWLPYDKAKSGGNSDTSFGCTGTIDTLIEQNRGPRASKPKNRTTANESFVNNSKNGTCTGVHRESYNRLDFVTEYKDAKFFVIKSYSEDNVHKSIKYGVWVSTPNGNKRLNSAFHEAKEKHGNCPIFLLFSVNASAQFCGVAEMVGPVDYDKSVDYWKQDKWTGQFPVKWHIIKDVPNSQFRHIILENNDNKPVTNSRDTQEVELEQGNEMLNIFRNYESDSSILDDFDFYEDRQKAMQEKKTQHKASLLAAPMVVGSQQQIRRSLPTHLIHKMSKTFAQAVLLNENDKERSPAGKAVPGAARLRGSRVEPEKTRATMA* 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1466 572 PANTHER YTH YT521-B HOMOLOGY DOMAIN-CONTAINING 22 565 IPR045168 -
Vvi1g1466 572 Gene3D ph1033 like domains 308 483 - -
Vvi1g1466 572 CDD YTH 332 468 IPR007275 GO:0003723
Vvi1g1466 572 MobiDBLite consensus disorder prediction 290 304 - -
Vvi1g1466 572 ProSiteProfiles YTH domain profile. 331 468 IPR007275 GO:0003723
Vvi1g1466 572 Pfam YT521-B-like domain 331 468 IPR007275 GO:0003723
Vvi1g1466 572 FunFam YTH domain family 1, isoform CRA_a 311 483 - -
Vvi1g1466 572 MobiDBLite consensus disorder prediction 541 572 - -
Vvi1g1466 572 MobiDBLite consensus disorder prediction 285 304 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1466 Vvi-Chr1 21047005 21052812 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1466 K20102 - vvi:100248968 1167.53