Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1459 ATGAGAACCAGAAGAGGGGTTTGTTACCGTGAAGTGGACATGTGTACGGACAATAGAGTAGTGAAGAGAAGAGGGGATTTTTCCGGCGACAACGTCGTTTGCTGCCGGAAACGCCAGAGGCTAGCGCCGGAGTCCGCCGGAAAGTCTGATTTCTTTGAAGCCTTGCCAGATGATCTCGTCATTTGTATTCTCAGCAAACTCAGCTCCTCTGCTGGATGTCCTTCGGATTTCATCAACGTTTTGCTCACATGCAAAAGATTTAACGGATTAGGTCTTCATTCTCTAGTGCTATCCAGAGCTTCTTCGAAATCGCTCGCCGTTAGAGCGAAGAACTGGTCTGAGTCGGCTCTTCGGTTCTTGAAACTTTGCGCCGATGCCGGCAACGTCGAGGCGTGCTACACTCTTGGCATGATTCGTTTCTACTGTTTACAAAATCGAGTGAGCGGAGCTTCGCTGATGGCTAAAGCCGCTATAAGTTCGCACGCGCCGGCACTGTACTCGCTTGCCGTGATACAGTTCAACGGTAGCGTCGGCTCCAAGAACGACAAGGATCTTCGAGCCGGCGTGGCTCTCTGTGCCAGAGCTGCCTTCCTCGGCCACATCGACGCGCTTCGCGAACTTGGCCACTGCCTCCAAGACGGCTACGGCGTTCGCCAAAACGTTGCTGAAGGACGGCGGTTCCTTGTCCAAGCTAACGCCAGAGAGCTAGCCGCCGTCCTCTCCTCGGCATCTTCGGCAGTTTCGTCGCGCTCGTGGCTCACGTGGAATCCACACCAACATCATCGCCATGTAACCGGCTCGGGATGTCCGTTATTAAGCGATTTCGGCTGCAACGTGCCGGCACCGGAGGCGCATCCAGCAAGCCGCTTCTTGGCGGAGTGGTTCGCCGCTCGTGGTGGCGTTCCCGGTCCAGGGCTGAGGCTTTGCTCTCACGCCGGTTGTGGACGTCCGGAGATGAGACGACACGAGTTTCGTCGCTGTTCCGTGTGTGGTATCGTGAACTATTGCTCTCGCGCGTGTCAAGCACTCGACTGGAAGTTGCGCCACAAGGCGGCGTGCGCGCCGGTGGAGCGTTGGCTAGTCGACGACGGTGATGCTAACGGAGAAGGTGCTGTAGCCGGCGCCGCAGCGGAGGACGACGTCATCGTCGCTAGTTAA 1158 0.5665 MRTRRGVCYREVDMCTDNRVVKRRGDFSGDNVVCCRKRQRLAPESAGKSDFFEALPDDLVICILSKLSSSAGCPSDFINVLLTCKRFNGLGLHSLVLSRASSKSLAVRAKNWSESALRFLKLCADAGNVEACYTLGMIRFYCLQNRVSGASLMAKAAISSHAPALYSLAVIQFNGSVGSKNDKDLRAGVALCARAAFLGHIDALRELGHCLQDGYGVRQNVAEGRRFLVQANARELAAVLSSASSAVSSRSWLTWNPHQHHRHVTGSGCPLLSDFGCNVPAPEAHPASRFLAEWFAARGGVPGPGLRLCSHAGCGRPEMRRHEFRRCSVCGIVNYCSRACQALDWKLRHKAACAPVERWLVDDGDANGEGAVAGAAAEDDVIVAS* 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1459 385 CDD F-box_SF 55 88 - -
Vvi1g1459 385 Gene3D Tetratricopeptide repeat domain 94 252 IPR011990 GO:0005515
Vvi1g1459 385 SUPERFAMILY HIT/MYND zinc finger-like 308 358 - -
Vvi1g1459 385 Pfam MYND finger 313 353 IPR002893 -
Vvi1g1459 385 Gene3D - 305 357 - -
Vvi1g1459 385 PANTHER MYND DOMAIN-CONTAINING 1 376 IPR044508 -
Vvi1g1459 385 FunFam Predicted protein 301 358 - -
Vvi1g1459 385 SUPERFAMILY F-box domain 45 96 IPR036047 GO:0005515
Vvi1g1459 385 ProSiteProfiles Zinc finger MYND-type profile. 311 353 IPR002893 -
Vvi1g1459 385 SUPERFAMILY HCP-like 110 231 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1459 - - vvi:100260936 744.577