Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1453 ATGCAAACCAAGAAAAAAATGCCTGGAAGAAATTCTGCTCGAGAGCATGCCAATCCCAGGGTTTCGAGATCTCAGAAGAAGGTATCTGAAACTGTACAAATTAAAGAACAGAAAGTAACTGAGATAATTGCATCCTCTACCCGAAGGCAGAGATTTGCTGGTTCGCTTTCCAAGAAATGTGAAGAGCCTGTTGCTGCAGGAAATTTGAATACCAGATACGGTTTGGTGCATGATGAGACCTTTGATGTTTGTTTGGGGTATAATGGAACTAGTGATGCTTCCATTGACTGTAAGAGCTACAACGAGGAAACTGCTGTGCCTGTGTTGGAAACTATATTTTCTCCTGCTTTTCACATGTCAAAAAGTGCTGGTGGGGAAATTGCTAGTGGAGCCGACTTCATCAAAATTCTCCGGAATGGAGACCAGAAATTTCATCAGGATTGTGAAATTGAGTATTCACATGTTGATACTCTGAACTGTCACTTTATCAAGAGAACTTCTGAATCCATTTGTAGAGATGAGAATTCCAATGAGAATACAATAACTTCAGTTAACACAACATGCCATAGTAATATGGAAGTGGATAAAAACATGCCATCCAAAAATGCAAATGTGGGTAACTGTGGTAGTCAGAAGCTTCCATCAGATGCAACTTCTATGAACTCATCTTGCAATGTGGACTTAGAAGGAAACAACCTGTCATCTGAAGTTTCAGCCATATATCTTGCCATGAAAAACTCTAAACTGGAATGTGTTGATGAGCATGGTCAAGATTCTATGTCAACTGATGGGTGCGTTGAGGATGATGACAGTGAGGAATTTGACGACTTCGATCCTTACTTATTCATAAAAAACTTACCAGATTTGTCATCCGTTGTTCCAACTTTCCGCCCCCTGCTGCTTCCTAAACAGACGCGGAGTTGTCCTCCAACTACTCTAGTTCTGGACTTAGATGAGACCTTAGTGCACTCTACACTAGAACCTTGTGATGATGCAGACTTCACATTCCCCGTTAATTTTAACCTCAAGGAGCATATGGTTTATGTTCGATGCCGTCCTCACCTCAAAGATTTTATGGAGAGGGTTGCCAGCCTTTTCGAAATAATCATATTTACGGCCAGCCAAAGCATCTATGCTGAGCAGCTCCTCAATGTCCTTGATCCAAAGAGGAGGTTCTTTCGTCATCGTGTTTATCGTGAATCCTGTGTTTTTGTGGAGGGAAATTACCTAAAGGATTTGTCAGTTCTTGGCCGGGATTTAGCACATGTCATCATAATTGACAACTCTCCACAGGCGTTTGGGTTTCAAGTGGACAATGGAATACCAATTGAGAGCTGGTTCAACGATCGTTCAGACCAAGAGTTGCTTTTACTTCTTCCATTTTTGGAGAGTTTAGTTGGAGTTGAAGATGTCCGGCCACTGATTGCTAAGAAGTTCAACCTTCGAGAGAGAATCAATGCTGCAGCTGTTTATCCTTTAGAATCAAATAGTGGGGATCCTTTTGAAAGGTGA 1512 0.4147 MQTKKKMPGRNSAREHANPRVSRSQKKVSETVQIKEQKVTEIIASSTRRQRFAGSLSKKCEEPVAAGNLNTRYGLVHDETFDVCLGYNGTSDASIDCKSYNEETAVPVLETIFSPAFHMSKSAGGEIASGADFIKILRNGDQKFHQDCEIEYSHVDTLNCHFIKRTSESICRDENSNENTITSVNTTCHSNMEVDKNMPSKNANVGNCGSQKLPSDATSMNSSCNVDLEGNNLSSEVSAIYLAMKNSKLECVDEHGQDSMSTDGCVEDDDSEEFDDFDPYLFIKNLPDLSSVVPTFRPLLLPKQTRSCPPTTLVLDLDETLVHSTLEPCDDADFTFPVNFNLKEHMVYVRCRPHLKDFMERVASLFEIIIFTASQSIYAEQLLNVLDPKRRFFRHRVYRESCVFVEGNYLKDLSVLGRDLAHVIIIDNSPQAFGFQVDNGIPIESWFNDRSDQELLLLLPFLESLVGVEDVRPLIAKKFNLRERINAAAVYPLESNSGDPFER* 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1453 503 Gene3D - 297 480 IPR023214 -
Vvi1g1453 503 ProSiteProfiles FCP1 homology domain profile. 306 465 IPR004274 -
Vvi1g1453 503 MobiDBLite consensus disorder prediction 1 31 - -
Vvi1g1453 503 FunFam CTD small phosphatase-like protein 2 299 479 - -
Vvi1g1453 503 CDD HAD_FCP1-like 312 443 - -
Vvi1g1453 503 NCBIfam dullard-like phosphatase domain 311 474 IPR011948 GO:0016791
Vvi1g1453 503 MobiDBLite consensus disorder prediction 8 31 - -
Vvi1g1453 503 SUPERFAMILY HAD-like 300 476 IPR036412 -
Vvi1g1453 503 Pfam NLI interacting factor-like phosphatase 312 472 IPR004274 -
Vvi1g1453 503 PANTHER DULLARD PROTEIN PHOSPHATASE 180 478 - -
Vvi1g1453 503 SMART forpap2 309 453 IPR004274 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1453 Vvi-Chr1 20925190 20932530 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1453 K17616 K12778 vvi:100262484 994.956