Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1439 ATGCGCCACGGAAGAACACTTTCTTCTTCGGCGGCTGCTGGTGCGGGTGTTAAACTTGGAGATATGCTTTTAGTGGCCTCCATTTCGAAAACACTATCTGAGCGCGGGACTCGGAGCCCTGACCTCGAGTCCATTCCAATATCGGAGTCTCTTGTTGTGCAAATTCTTGGGAGAAATTCGATTGATGTCTTCAGGAAGGTGGAGTTTTTCAGGTGGTGTTCTTTCAGGCATAATTACAAACATTCGGTGGGCGCTTACTCTCACATTTTCCGAATTGTGTGCAGAGCCGGAGCTGAGTTTCTGGACCAAGTCCCGCTCCTGATGAGCTCCATGAAGGATGATGGAGTGGTTGTTGGCCAGGAAACCTTCAAACTCCTGCTTGATTCTCTTATTCGGGCGGGTAAATTTGATTCGGCACTTGAAATTCTTGATCACATAGAGGAATTGGGGACTGGCCTGAACTCCTATGTGTATGACTCTGTTCTTGTTGCTTTAATTAGAAAAAACCAATTGGGTTTGGCCTTGCCCCTCTTTTTCAAGCTATTGGGTGGTGATGAAGGGCAGGGAGGTGTCCCGGTTCCTGAATCCAATGCCTGTAATCAGTTGTTGGTTGCTCTGAGAAAAGCAGACATGAAAATTGAGTTCAGAAATGTGTTTGAAAAATTGAGAGCAAAGAAGGATTTTGACTTGGATACACAGGGTTACAACATATGCATACATGCATTTGGGTGTTGGGGTGATCTGGGTACTGCTCTGAACCTCTTCAAAGAGATGAAGGATAAGAGCTTGAATTCTAGTTCTTTTGGCCCTGATTTGTGCACCTATAATAGTCTGATTCGTGTGCTGTGCTTGGTCGGGAAGGTGAAAGATGCTCTCATTGTTTGGGAGGAATTGAAAGGGTCTGGGCATGAGCCTGATGCTTTCACTTACCGAATCCTTATTCAAGGGTGCTCTAAATCATATAGAATGGATGATGCGATGAGGATATTCAATGAGATGCAGTATAATGGATTCTGTCCAGATACCATTGTTTATAATACTCTACTGGATGGGCTATTTAAAGCCAGGAAAGTTATGGAAGCTTGCCAAGTGTTTGAGAAGATGGTTGAGGATGGGGTAAGGGCATCGTGTTGGACTCATAATATTGTGATTTGTGGCTTGTTCAGGAATGGGAGGGCTGCAGCAGGTTACACTCTATTTTGTGACTTGAAAAAGAAGGGGAAGTTTGTGGATGGAATCACGTATAGCATTGTTGTGTTGCAGCTTTGTAGGGAGGGGCAACTTGAGGAAGCACTGCAGTTGGTGGAGGAAATGGAGGCTAGAGGGTTTGTTGTTGATCTTGTTACCATAACATCCCTCTTGATTGGATTCCATAAGCAAGGTAGGTGGGATTGGACAGAGAGGCTCATGAAGCACATTAGGGATGGTAATCTAGTACCAAATGTCCTCAACTGGAAAGCCAACATGGAGGCTTATATGAAAGCCCCACAAAGCCGAAGAAAAGATTATACACCAATGTTCCCATCTGAAGGTAACTTGAGTGAAATCATGAGTTTAATTAGTTCTGCTGACACGGAGATGGATGGCAGCCCTGGTTCAGAAGAGGATGTGGCTCAACATGAGGATCAGTGGTCATCATCCCCATATATGGATCAATTGGCCAGTCAATTGAAGTCCATTGATGTTTCTTCTCAACTGCTCTCATTATCCAGAGGCCAACGAGTCCAGGCAAAAGGGATAGACTCATTTGACATTGATATGGTCAATACTTACCTATCAATATTCTTGGCCAAAGGAAAGCTGAGCTTAGCCTGCAAGTTGTTTGAGATATTTAGCAATATGGGTGTCGACCCTGTGATTTACACCTACAATTCCATGATGACTGCATTTGTCAAGAAGGGCTATTTCAATGAGGCATGGGGCGTTTTTCATGAAATGGGAGAGAAGGTCTGCCCACCAGACATAGCAACATACAATGTGATAATTCAAGGCTTGGGGAAGATGGGAAGAGCAGATCTAGCTAGTGCTGTTCTCGATATGCTAATGAAGCAAGGTGGATATCTTGACATTGTGATGTATAATACACTGATTAATGCTCTTGGGAAGGCTGGGCGGATTGATGAAGCAACCAAGCTTTTTGAGCAAATGAGGAGCAGTGGGATAAATCCCGATGTTGTCACTTTTAATACACTTATAGAAATTCATGCCAAGGCAGGTCAACTAAAGGCTGCATACAAGTTCTTAAAATTGATGTTGGATGCTGGATGCTCCCCCAACCATGTTACAGACACAACCCTGGATTTTCTGGGGAAGGAGATTGAGAAGTTGAGGTACAAAAAAGCATCAATCATACGCACTAGTAAAGATGATTCTTCTTGA 2379 0.4388 MRHGRTLSSSAAAGAGVKLGDMLLVASISKTLSERGTRSPDLESIPISESLVVQILGRNSIDVFRKVEFFRWCSFRHNYKHSVGAYSHIFRIVCRAGAEFLDQVPLLMSSMKDDGVVVGQETFKLLLDSLIRAGKFDSALEILDHIEELGTGLNSYVYDSVLVALIRKNQLGLALPLFFKLLGGDEGQGGVPVPESNACNQLLVALRKADMKIEFRNVFEKLRAKKDFDLDTQGYNICIHAFGCWGDLGTALNLFKEMKDKSLNSSSFGPDLCTYNSLIRVLCLVGKVKDALIVWEELKGSGHEPDAFTYRILIQGCSKSYRMDDAMRIFNEMQYNGFCPDTIVYNTLLDGLFKARKVMEACQVFEKMVEDGVRASCWTHNIVICGLFRNGRAAAGYTLFCDLKKKGKFVDGITYSIVVLQLCREGQLEEALQLVEEMEARGFVVDLVTITSLLIGFHKQGRWDWTERLMKHIRDGNLVPNVLNWKANMEAYMKAPQSRRKDYTPMFPSEGNLSEIMSLISSADTEMDGSPGSEEDVAQHEDQWSSSPYMDQLASQLKSIDVSSQLLSLSRGQRVQAKGIDSFDIDMVNTYLSIFLAKGKLSLACKLFEIFSNMGVDPVIYTYNSMMTAFVKKGYFNEAWGVFHEMGEKVCPPDIATYNVIIQGLGKMGRADLASAVLDMLMKQGGYLDIVMYNTLINALGKAGRIDEATKLFEQMRSSGINPDVVTFNTLIEIHAKAGQLKAAYKFLKLMLDAGCSPNHVTDTTLDFLGKEIEKLRYKKASIIRTSKDDSS* 793
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1439 792 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3, MITOCHONDRIAL 31 495 - -
Vvi1g1439 792 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 654 688 IPR002885 -
Vvi1g1439 792 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 119 153 IPR002885 -
Vvi1g1439 792 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 411 445 IPR002885 -
Vvi1g1439 792 Gene3D Tetratricopeptide repeat domain 681 771 IPR011990 GO:0005515
Vvi1g1439 792 Pfam PPR repeat 409 439 IPR002885 -
Vvi1g1439 792 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 271 305 IPR002885 -
Vvi1g1439 792 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 446 480 IPR002885 -
Vvi1g1439 792 NCBIfam pentatricopeptide repeat 343 376 IPR002885 -
Vvi1g1439 792 NCBIfam pentatricopeptide repeat 413 446 IPR002885 -
Vvi1g1439 792 NCBIfam pentatricopeptide repeat 621 655 IPR002885 -
Vvi1g1439 792 NCBIfam pentatricopeptide repeat 726 759 IPR002885 -
Vvi1g1439 792 NCBIfam pentatricopeptide repeat 691 725 IPR002885 -
Vvi1g1439 792 NCBIfam pentatricopeptide repeat 657 689 IPR002885 -
Vvi1g1439 792 NCBIfam pentatricopeptide repeat 273 307 IPR002885 -
Vvi1g1439 792 NCBIfam pentatricopeptide repeat 235 262 IPR002885 -
Vvi1g1439 792 NCBIfam pentatricopeptide repeat 308 342 IPR002885 -
Vvi1g1439 792 NCBIfam pentatricopeptide repeat 379 407 IPR002885 -
Vvi1g1439 792 Gene3D Tetratricopeptide repeat domain 410 520 IPR011990 GO:0005515
Vvi1g1439 792 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 341 375 IPR002885 -
Vvi1g1439 792 Pfam PPR repeat 235 261 IPR002885 -
Vvi1g1439 792 Pfam PPR repeat 122 150 IPR002885 -
Vvi1g1439 792 SUPERFAMILY HCP-like 595 755 - -
Vvi1g1439 792 Gene3D Tetratricopeptide repeat domain 549 680 IPR011990 GO:0005515
Vvi1g1439 792 Gene3D Tetratricopeptide repeat domain 44 183 IPR011990 GO:0005515
Vvi1g1439 792 Gene3D Tetratricopeptide repeat domain 336 407 IPR011990 GO:0005515
Vvi1g1439 792 Gene3D Tetratricopeptide repeat domain 194 335 IPR011990 GO:0005515
Vvi1g1439 792 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 689 723 IPR002885 -
Vvi1g1439 792 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 619 653 IPR002885 -
Vvi1g1439 792 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 231 265 IPR002885 -
Vvi1g1439 792 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 306 340 IPR002885 -
Vvi1g1439 792 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 724 758 IPR002885 -
Vvi1g1439 792 Pfam PPR repeat family 689 732 IPR002885 -
Vvi1g1439 792 Pfam PPR repeat family 620 666 IPR002885 -
Vvi1g1439 792 Pfam PPR repeat family 340 388 IPR002885 -
Vvi1g1439 792 Pfam PPR repeat family 270 319 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1439 335 766 Glycosyltransferase AT1G05670 24.711 2.64e-34 138
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1439 - - vvi:100266135 1571.21