Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1438 ATGGTCGGAAAAGCAACCATTTCTGTGCTTATCTTGGCTCTCCTCCTTCTCACCACCTCCATCTTCATCGCTACCGTTGATCTCCGATCCTACTTGTACCCCATTCTATTGCCAAGGCCGGGTGGACGCTTTCCATGTTCAACGGGAGGAGGTCCTCTCATGGTCTACATGTACGATCTCCCCCGGCGGTTCCACGTCGGGATGTTGCGGCGCCGGAGCCCGGCAGATGAGTCGCCGGTGACGGCGGAGAATTTGCCGCCGTGGCCGTCGAATTCTGGACTGAAGAAGCAGCACAGTGTGGAGTATTGGATGATGGCTTCGCTTCTGTACGATGGGGGTGGCGGGAATGAGACCAGAGAGGCGGTTAGGGTTTGGGATCCGGAGATGGCTGATGCGTTCTTTGTGCCGTTTTTTTCGTCGTTGAGTTTCAATACTCATGGGCATAATATGACAGATCCGGATACGGAGTTCGATCGGCAATTGCAGATTGACATACTAAAGATTTTGAGGGAATCCAAGTACTGGCAGAGATCTGGAGGCAGGGACCATGTGATTCCCATGCATCATCCGAATGCTTTCAGATTTTTTCGGGAACAGGTGAACACATCTATTCTTATTGTTGCAGATTTTGGACGCTATCCTAAAGAGATATCAAACCTGAGGAAAGATGTGGTGGCCCCTTATGTGCACGTGGTTGATTCCTTTACAGATGATAATTCTCCAGACCCATATGAGTCCCGCACCACACTTTTATTCTTCAGGGGGAGGACAATCAGGAAAGATTCCACTCAAGGGATGCGATCATCGAAGTTTTGTCTGCATCCAGCAGGAGACACCCCTTCATCTTGCCGCCTGTTTGATGCTATTGTGAGCCACTGCGTTCCAGTGATTGTGAGCGACCAAATTGAGCTCCCCTATGAGGATGAGATTGACTACACACAGTTCTCAATTTTCTTCTCTGATAAAGAGGCATTGGAACCAGGTTACATGATAGAGCAGCTCCGGCAAATTCCCAAAGAGAGATGGGTTGAAATGTGGAGGCATCTTAAGTACATCTCCCATCACTATGAATTCCAGTACCCCCCAAAGAAAGGAGACGCTATTGATATGCTATGGAGACAGGTAAAGCACAAGCTTCCCAGGGCCAACCTTGATGTACATAGAAGCCGAAGGTTGAAAGTTCCAGACTGGTGGGACCACAGGAGATAG 1209 0.4938 MVGKATISVLILALLLLTTSIFIATVDLRSYLYPILLPRPGGRFPCSTGGGPLMVYMYDLPRRFHVGMLRRRSPADESPVTAENLPPWPSNSGLKKQHSVEYWMMASLLYDGGGGNETREAVRVWDPEMADAFFVPFFSSLSFNTHGHNMTDPDTEFDRQLQIDILKILRESKYWQRSGGRDHVIPMHHPNAFRFFREQVNTSILIVADFGRYPKEISNLRKDVVAPYVHVVDSFTDDNSPDPYESRTTLLFFRGRTIRKDSTQGMRSSKFCLHPAGDTPSSCRLFDAIVSHCVPVIVSDQIELPYEDEIDYTQFSIFFSDKEALEPGYMIEQLRQIPKERWVEMWRHLKYISHHYEFQYPPKKGDAIDMLWRQVKHKLPRANLDVHRSRRLKVPDWWDHRR* 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1438 402 PANTHER EXOSTOSIN HEPARAN SULFATE GLYCOSYLTRANSFERASE -RELATED 50 372 IPR004263 GO:0006486|GO:0016757
Vvi1g1438 402 Pfam Exostosin family 260 333 IPR040911 -
Vvi1g1438 402 Pfam Exostosin family 52 262 IPR040911 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1438 Vvi-Chr1 20746190 20749788 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1438 - K23200 vvi:100260931 813.913