Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1434 ATGCCGATCGCCTCTACCTCAATCTTCCGCTACAGCAATCCTTCCTCACTCCTCCTCCTCCGCCGTGGCGCTGCTGCCTCTTTCCGCCACCTCTCCTTTGTCGCCAAACACCAAAACCCCATCTCCAGAAAACCTCAAAATAAGAATCTCCTCCGAGCAAAACAGACAGTCAAGCACCTCTCCTCCCTCTCGCCGACGCTCCCAGTGAACCATCGCCCCCTCCTGTCCGCCACTGAAGCCGTCGGCATGGTTGCTGCTGCCCAAGCAAACTTCATGCGAGTCATAGTCGAAGATTCTAGAGTCGAAGACGGCGACGGCGGCGGCGACGGAGATGGCGATGGCGATGCCGTCAGGGTTGGGGTTGAGCTGCTGTGTGTGGTGAGAGCCGTGTTGAAGAAGATCAAGAGGAGGGTTTTGGTGGGAGATAAGGTGTTGGTTGGGTCGATAGATTGGGTGGATCGCCGGGGCGTGATTGAGAATGTGTTCTCGAGGAAATCGGAGATTCTGGACCCTCCAGTGGCCAATGTGGATCACCTGTTGGTGCTTTTCGCGATGGAGCAGCCAAAATTGGAGGTGTATTCGCTTACTCGGTTTTTGGTGGAGGCTGAGTCCACTGGGATTCCGATCACACTCGCATTGAACAAATCGGAACTCGTCGACGAAGAGACACGAGTTGCTTGGAAATCAAGGCTCCGAAGTTGGGGCTATGGGCCAGTTTTTTGCAGTGTTGAATCCAAGTTTGGACTTGATACTCTTGCATTCAGCTTGAGAGAACAAACAACTGTGATTGTAGGTCCAAGTGGAGTAGGGAAGTCTAGTCTCATAAATGCTTTGAGAAGCAACCACCCTCTTATTAATGTTTCTTCTGAAGAGAACAATTGGTTTGATTCTATTTTAGGGAGCAAATTGTTAGAAGAACAGCGTGTTGGGGAAGTGTCAGTAAGAAGTGGGAGAGGGAAGCACACTACTCGCCATGTATCCTTACTTCCGCTATCTGGAGGGGGATATCTTGCTGATACTCCTGGGTTTAACCAACCAAGCTTGCTGAAAGTAACAACTCAATCTCTTGCACAGACTTTCCCAGAGATCAGGAAATTGCTCAGTGGCAGTGCTAATGAACCTGAAAAATGCTCATTCAATGATTGCTTGCATCTTGGTGAGCCAGGGTGCGTTGTGAAAGGAGATTGGGAAAGATATCCATACTATTTTCAACTGCTTGATGAGATAAAAATCAGAGAAGAATTTCAGTTGAGGACCCTGGGAACCAAAAGAGAGGGTGATGTGAGGTACAAGACAGGTGATATGGGTGTCAAGCAAGCAGAACCACGACTTGAGCCTAAGAAGCACAGAAGACAATCTCGCAAGAGGATGAACCAGTCCATCCTAGACGAGTTGGACGACCTTGATGATGATGATAGCTTATTAGATGCTGAAGGTGACTCGATTTTAAATGAAATAGGCAATGAAAATCAGTAG 1476 0.4878 MPIASTSIFRYSNPSSLLLLRRGAAASFRHLSFVAKHQNPISRKPQNKNLLRAKQTVKHLSSLSPTLPVNHRPLLSATEAVGMVAAAQANFMRVIVEDSRVEDGDGGGDGDGDGDAVRVGVELLCVVRAVLKKIKRRVLVGDKVLVGSIDWVDRRGVIENVFSRKSEILDPPVANVDHLLVLFAMEQPKLEVYSLTRFLVEAESTGIPITLALNKSELVDEETRVAWKSRLRSWGYGPVFCSVESKFGLDTLAFSLREQTTVIVGPSGVGKSSLINALRSNHPLINVSSEENNWFDSILGSKLLEEQRVGEVSVRSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTTQSLAQTFPEIRKLLSGSANEPEKCSFNDCLHLGEPGCVVKGDWERYPYYFQLLDEIKIREEFQLRTLGTKREGDVRYKTGDMGVKQAEPRLEPKKHRRQSRKRMNQSILDELDDLDDDDSLLDAEGDSILNEIGNENQ* 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1434 491 Gene3D - 160 348 IPR027417 -
Vvi1g1434 491 Gene3D Probable gtpase engc; domain 3 350 414 - -
Vvi1g1434 491 CDD YjeQ_EngC 174 407 IPR004881 GO:0003924|GO:0005525
Vvi1g1434 491 MobiDBLite consensus disorder prediction 432 491 - -
Vvi1g1434 491 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 168 413 IPR027417 -
Vvi1g1434 491 SUPERFAMILY Nucleic acid-binding proteins 81 165 IPR012340 -
Vvi1g1434 491 ProSiteProfiles EngC GTPase domain profile. 174 344 IPR010914 GO:0003924|GO:0005525
Vvi1g1434 491 ProSiteProfiles Circularly permuted (CP)-type guanine nucleotide-binding (G) domain profile. 165 346 IPR030378 GO:0005525
Vvi1g1434 491 MobiDBLite consensus disorder prediction 464 478 - -
Vvi1g1434 491 Hamap Small ribosomal subunit biogenesis GTPase RsgA [rsgA]. 80 413 IPR004881 GO:0003924|GO:0005525
Vvi1g1434 491 Pfam RsgA GTPase 161 348 IPR010914 GO:0003924|GO:0005525
Vvi1g1434 491 PANTHER SMALL RIBOSOMAL SUBUNIT BIOGENESIS GTPASE RSGA 51 472 IPR004881 GO:0003924|GO:0005525
Vvi1g1434 491 MobiDBLite consensus disorder prediction 432 447 - -
Vvi1g1434 491 NCBIfam ribosome small subunit-dependent GTPase A 138 282 IPR004881 GO:0003924|GO:0005525
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1434 K06949 - vvi:100247229 918.302