Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1431 ATGCCTGGTATTGTGGCTGGAAAAAAGAGATTCACCCAATCAAATATGTGTTTATCCAATTCAGTCCAGCAAGATACACTAACTCTTTCCAAAAGCAACCCCTGTTTAACTTCTCAATTCGCTGACGATTCTTACGGCCCCATTTTGCCTGGGCTGCCTGATGATGTGGCAAAATATTGCCTTGCACTTGTTCCTCGTTCTAACTTCCCAGCTATGGGTGGTGTCTCCAAGAAATGGAGGTCATTCATCCGAAGCAAAGAATTCATCACTGTAAGAAAACTAGCTGGGATGCTCGAAGAATGGCTCTATGTCTTGACTATGGATGCTGAAGGAAAGGGGAGCCACTGGGAAGTATTGGATTGTTTGGGACACAAACACCAGCTTCTCCCCCCAATGCCTGGCCCAGTTAAGACAGGATTTGAGGTGGTTGTTCTCAATGGAAAACTTCTTGTCATGGCTGGCTGTTCAGTTGTTGGTAGGACTGGCTCTGCCTCAGCAGACGTCTACCAGTATGATTCTTGCCTCAACAGTTGGAGCAAACTAGCAAACATGAATGTGGCTCGCTATGACTTCGCTTGTGCTGAAGTTAATGGCATGGTTTATGCTGTTGGTGGATATGGGGCAGACGGTGACAGTCTCTCCAGTGCAGAGATGTATGACGCTGATGCTGACAAATGGATCTTAATTGAAAGTCTCCGCCGCCCAAGGTACGGCTGCTTTGCATGTGGATTTGAGGGAAAACTCTATGTCATGGGTGGAAGGTCAAGTTTCACCATTGGAAACTCAAGGTTTGTTGACGTGTACAACCCTGAGAGGCACACCTGGTGTGAGATGAAGAACGGCCGTGTCATGGTCACAGCTCATGCCGTGCTGGGAAAGAAGCTCTTCTGTATGGAGTGGAAGAACCAGCGGAAACTCGCTATATTCAATCCAGAGGACAACTCATGGAAAATGGTACCAGTCCCATTAACTGGCAGCTCAAGCATTGGCTTCCGCTTTGGCATCCTGGAGGGTAAGCTTCTTCTCTTCTCACTAGAGGAGGATCCTGGCTATCGCACCCTGTTGTATGACCCGGATGCAGCCCCAGGCTCAGAATGGCAGACTTCTGAGATAAAGCCATCAGGTTCATGCTTATGCAGTGTGACAATCAAGGCATGA 1158 0.4793 MPGIVAGKKRFTQSNMCLSNSVQQDTLTLSKSNPCLTSQFADDSYGPILPGLPDDVAKYCLALVPRSNFPAMGGVSKKWRSFIRSKEFITVRKLAGMLEEWLYVLTMDAEGKGSHWEVLDCLGHKHQLLPPMPGPVKTGFEVVVLNGKLLVMAGCSVVGRTGSASADVYQYDSCLNSWSKLANMNVARYDFACAEVNGMVYAVGGYGADGDSLSSAEMYDADADKWILIESLRRPRYGCFACGFEGKLYVMGGRSSFTIGNSRFVDVYNPERHTWCEMKNGRVMVTAHAVLGKKLFCMEWKNQRKLAIFNPEDNSWKMVPVPLTGSSSIGFRFGILEGKLLLFSLEEDPGYRTLLYDPDAAPGSEWQTSEIKPSGSCLCSVTIKA* 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1431 385 Pfam F-box domain 51 88 IPR001810 GO:0005515
Vvi1g1431 385 SUPERFAMILY Kelch motif 99 346 IPR015915 GO:0005515
Vvi1g1431 385 PANTHER OS02G0202900 PROTEIN 7 381 IPR045887 -
Vvi1g1431 385 Gene3D - 86 383 IPR015915 GO:0005515
Vvi1g1431 385 SMART kelc_smart 148 198 IPR006652 GO:0005515
Vvi1g1431 385 SMART kelc_smart 247 292 IPR006652 GO:0005515
Vvi1g1431 385 SMART kelc_smart 199 246 IPR006652 GO:0005515
Vvi1g1431 385 Pfam Kelch motif 138 185 IPR006652 GO:0005515
Vvi1g1431 385 Pfam Kelch motif 235 280 IPR006652 GO:0005515
Vvi1g1431 385 Pfam Kelch motif 187 232 IPR006652 GO:0005515
Vvi1g1431 385 CDD F-box_AtAFR-like 48 92 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1431 52 230 Miscellaneous Gene Families AT4G33900 29.016 1.07e-13 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1431 - - vvi:100267636 798.89