Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1428 ATGCAAGCTGTAAACATGCTTCCATTTTGGTCAGAATTACATTTTTCCGGTTGTGATCTCTATGAGTTCCCTCACCTTGTTCCGTTTGTTAATGTTACTTCTCTTTTGGTCATTGATCTCTCCTTCAACAATTTCAACACTACATTACCTGGCTGGTTGTTTAACATCAGCACCCTTACGGATCTTTATTTAATTGAAGCTAGAATTAAAGGTCCTATTCCCCATGTTAGCTTGCGAAGCCTTTGTAACTTGGTGACTTTAGATCTCTCATTCAATAATATTGGAAGTGAAGGAATTGAATTGGTGAACGGTTTGTCAATCTGCAGTAATAATTCCTTGGAAGGGTTATACTTGGGTGGTAATGAATTCAGTGGTCCAATTCCAACATGGATTGGAAACTTGCTGCGGATGAAGAGACTTGGCTTGTCATTCAATCTAATGAATGGGACGATTCCAGAAAGTATTGGACAACTTAGAGAGCTGACTGTGTTGTATCTTGATTGGAATTCTTGGGAAGGGGTAATATCTGAAATTCATTTCAGTAATCTTACAAAACTGGAATATTTCTCTTTAAGCTTATCACTCAAAAAGCAGTCTCTCCGCTTTCATCTGAGACAAGAATGGATTCCTCCCTTCAGTGTCAATTCTATTATGATTTCCAACTGCTATTTATCTCCCAAGTTCCCCAACTGGCTTAGAACTCAAAAGAGACTAAAAATAATAGTTCTTAAAAATGTGGGGATTTCAGATACAATACCAGAATGGCTTTGGAAACTAGATTTTGAATGGTTAGATCTTTCTAGAAACCAATTGTATGAAAGGCTTCCCAACTCATTATCCTTTAGCTCAAAAGCATACCTGGTGGATTTAAGCTTCAACCGCTTGGTGGGCCGATTACCACTTTGGTTTAATGTGACATTGCTCTTTCTCGGAAACAATTCATTTTCAGGTCCAATTCCCTTGAACATCGGGGAATCATCGAGTTTGACAGTCCTTGATGTTTCTGGTAACTTGTTAAATGGCAGCATTCCTTCATCAATTAGTAAACTAAAGTATTTGGGAGTAATTAATCTCTCAAACAATCATTTATCTGGAAAGATTCCAAAGAATTGGAATGATTTGCACGTGCTTTGGACCATAGATCTATCCAAGAACAAACTGTCTGGTGGGATTCCGAGTTGGATGTCTTCAAAATCTTCACTTGAACGGTTGATATTGGGTGACAACAATCTTTCTGGGGAACCCTTTCCAAGCTTACGAAACTGTACAGGGCTGTCCTCTCTTGATCTGGGAAATAACAGGTTTTCGGGATCCATCCCACAATGCTTAGGCAAATTGACTGCTTTAAGTTCTGTGACCTTATTAGAATTTGATGACAACCCCGAGAGTCATTTCTTCTATTCAGAGCGCATGGAGCTAGTTGTGAAGGGACAAGACATGGAATTTGATAGCATACTGCCAATTGTGAATTTGATTGATCTTTCTAGCAATAACATTTGGGGAGAGATCCCAGAAGAGATCACAAATCTCTCGACCCTGGGACCAATTCCAACAACCAACCAGTTCTCGACATTCAATGATCCATCCATTTATGAGGCGAACCTGGGACTTTGTGGGCCTCCATTGTCAACCAACTGCTCCACTCTAAATGATCAAGATCACACAGATGAGGAGGATGATGAAGATGAATGGGACCTGTCATGGTTCTTCATAAGCATGGGATTGGGCTTTCCGGTGGGATTTTGGGCTGTATGTGGCAGTTTGGCTCTAAAGAAGTCTTGGAGGCAGACTTATTTCCGGTTCATTGATGAAACCAGAGATAGGCTATATGTCTTCACTGCAGTGAATGTGGCTCGTCTGAAAAGGAAGATGGAAGCAAATGGAGTTCATGGCTAA 1896 0.4019 MQAVNMLPFWSELHFSGCDLYEFPHLVPFVNVTSLLVIDLSFNNFNTTLPGWLFNISTLTDLYLIEARIKGPIPHVSLRSLCNLVTLDLSFNNIGSEGIELVNGLSICSNNSLEGLYLGGNEFSGPIPTWIGNLLRMKRLGLSFNLMNGTIPESIGQLRELTVLYLDWNSWEGVISEIHFSNLTKLEYFSLSLSLKKQSLRFHLRQEWIPPFSVNSIMISNCYLSPKFPNWLRTQKRLKIIVLKNVGISDTIPEWLWKLDFEWLDLSRNQLYERLPNSLSFSSKAYLVDLSFNRLVGRLPLWFNVTLLFLGNNSFSGPIPLNIGESSSLTVLDVSGNLLNGSIPSSISKLKYLGVINLSNNHLSGKIPKNWNDLHVLWTIDLSKNKLSGGIPSWMSSKSSLERLILGDNNLSGEPFPSLRNCTGLSSLDLGNNRFSGSIPQCLGKLTALSSVTLLEFDDNPESHFFYSERMELVVKGQDMEFDSILPIVNLIDLSSNNIWGEIPEEITNLSTLGPIPTTNQFSTFNDPSIYEANLGLCGPPLSTNCSTLNDQDHTDEEDDEDEWDLSWFFISMGLGFPVGFWAVCGSLALKKSWRQTYFRFIDETRDRLYVFTAVNVARLKRKMEANGVHG* 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1428 631 Gene3D Ribonuclease Inhibitor 213 555 IPR032675 -
Vvi1g1428 631 Pfam Leucine rich repeat 328 387 IPR001611 GO:0005515
Vvi1g1428 631 FunFam Leucine-rich repeat receptor protein kinase EMS1 319 415 - -
Vvi1g1428 631 Gene3D Ribonuclease Inhibitor 2 100 IPR032675 -
Vvi1g1428 631 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 28 305 - -
Vvi1g1428 631 SUPERFAMILY L domain-like 7 300 - -
Vvi1g1428 631 Gene3D Ribonuclease Inhibitor 101 207 IPR032675 -
Vvi1g1428 631 SUPERFAMILY RNI-like 217 512 - -
Vvi1g1428 631 PANTHER LRR RECEPTOR-LIKE KINASE 514 605 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1428 Vvi-Chr1 20621692 20624024 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1428 26 527 Receptor kinase-like Gene Family AT4G04220 32.601 1.69e-50 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1428 - - vvi:104880714 675.626