Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1427 ATGGCAAGTTGGAAAACCACCCTTCTACTTCTTACTCTTTTTCTCCTTTCTCTGTTTCTCGAGCCTCTCCTAGCTGAAGCTACTATTATCAATTCCATTGATGGTGGTATGAACAAGGGCTGCATTGAGGTAGAGCGGAAAGCGCTTCTTGAATTCAAAAATGGACTGATAGATCCTTCAGGTAGGCTTTCTTCCTGGGTTGGTGCAGATTGCTGCAAGTGGAAAGGTGTGGATTGCAACAACCAAACAGGGCATGTTGTCAAGGTTGACCTCAAATCTGGTGGTGACTTCTCACGTTTGGGTGGTGGCTTCTCACGTTTGGGTGGTGAGATAAGTGATTCCTTACTTGACTTGAAACACTTAAATTACTTGGACCTAAGTTTTAATGATTTTCAAGGAATTCCAATTCCAAATTTCTTGGGCTCATTTGAAAGGTTGAGATACCTTAATCTCTCTCATGCACGATTTGGTGGGATGATTCCTCCTCATCTTGGAAATTTGTCGCAGTTACGTTATCTTGACCTTCATGGAGGAGATTACTACAACTTTTCTGCTCCATTAGTGAGGGTTCATAATTTAAATTGGCTTTCTGGTCTTTCTTCTTTAAAATACCTTGATCTGGGGCATGTGAACCTTAGTAAAGCAACCACAAATTGGATGCAAGCTGTAAACATGCTTCCATTTTTGTTAGAATTACATTTGTCCCATTGTGAACTCAGTCACTTCCCTCAGTACTCCAATCCGTTTGTTAATTTGACTTCTGTTTCGGTCATTGATCTCTCCTACAACAATTTCAACACTACTTTGCCTGGCTGGTTGTTTAACATCAGTACCCTTATGGATCTTTATTTAAATGATGCTACAATTAAAGGTCCGATTCTCCATGTTAATTTGCTAAGCCTTCACAACTTGGTAACCTTAGATCTCTCATACAATAATATTGGAAGTGAAGGAATTGAATTGGTGAATGGTTTATCAGCATGCGCTAATAGTTCCTTGGAAGAGTTAAACTTGGGTTATAATCAATTCGGTGGTCAGTTGCCAGATTCATTAGGGCTCTTTAAGAATTTAAAATCCCTGGACTTGAGCTATAATAATTTTGTTGGTCCCTTCCCCAATTCAATTCAACACCTTACCAACTTAGAGCGTCTTGATCTGAGTGAAAACTCCATCTCAGGTCCAATTCCAACATGGATTGGAAACTTGCTGCGGATGAAGAGACTTGTCTTGTCAAACAATCTAATGAATGGGACTATTCCAAAAAGTATCGGACAACTTAGAGAGCTGATTGTGTTGTATCTTAATTGGAATGCTTGGGAAGGGTCTCTCCGTTTTCATTTGAGACCTGAATGGATTCCTCCCTTCAGTCTCGAATCTATCGGGGTTTGCAACTGCTATGTATCTCTCAAGTTCCCCAACTGGTTGAGAACTCAAAAGAGACTTGACAAATTGATTCTAATAAATGTGGGGATTTCAGATGCAATACCCGAATGGCTTTGGAAACAAGATTTTTTGCTGTTAGAACTTTCTAGAAACCAATTGTATGGAACGCTTCCCAACTCATTATCCTTTCGCCAAGGCGCATTGGTGGATTTAAGTTTCAACCGCTTGGGGGGCCCACTCCCACTTCGACTTAATGTGAGCTGGTTGTATCTGGGAAACAATTTATTTTCTGGTCCAATTCCCTTGAACATCGGGGAATCATCGAGTTTGGAAGCCCTTGATGTTTCTAGTAACTTGTTAAATGGCAGCATTCCTTCATCAATTAGTAAACTAAAGGATTTGGAAGTAATTGATCTCTCAAACAATCATTTATCTGGAAAGATTCCAAAGAATTGGAATGATTTGCACAGGCTTTGGACCATAGATCTATCCAAGAACAAACTGTCTGGTGGGATTCCGAGTTGGATATCTTCAAAATCTTCACTTACTGACTTGATATTGGGTGACAACAATCTTTCTGGGGAACCCTTTCCAAGCTTACGAAACTGCACATGGTTGTACGCCCTTGATCTTGGAAATAACAGGTTTTCGGGTGAGATACCCAAATGGATTGGAGAAAGAATGTCATCACTGAAGCAGCTGCGTCTACGAGGCAACATGTTCACAGGAGATATTCCTGAGCAATTGTGTTGGCTTTCTCGTCTCCACATTTTGGATCTTGCAGTGAACAATTTATCAGGATCCATCCCACAATGCTTAGGCAATTTAACTGCTTTAAGTTTTGTGACCTTATTAGACAGAAATTTTGACGACCCCAGTATTCATTACTCCTATTCGGAGCGCATGGAGCTAGTTGTAAAGGGACAAAGTATGGAATTTGAAAGCATATTGCCAATTGTGAATTTGATAGATCTTTCTAGCAATAACATTTGGGGAGAGATCCCAAAAGAGATCACAACTCTCTCGACCCTGGGTACCTTGAATTTATCCCGAAACCAGTTGACTGGAAAGATACCTGAGAAGATTGGAGCCATGCAAGGGCTAGAAACTCTTGACCTCTCATGCAACTGCCTGTCAGGCCCAATTCCTCCGAGCATGTCTTCTATAACCTCATTGAACCATTTGAACCTATCGCATAACCGCCTATCAGGACCAATTCCAACAACCAACCAGTTCTCGACATTCAACGATCCATCCATTTATGAGGCGAACCTGGGACTTTGTGGGCCTCCATTGTCAACCAATTGCTCCACTCTAAATGATCAAGATCACAAAGATGAGGAGGAAGATGAAGTTGAATGGGACATGTCATGGTTCTTCATAAGCATGGGATTGGGCTTTCCGGTGGGATTTTGGGCTATATGTGGCAGTTTGGTTCTAAAGAAGTCTTGGAGGCAGGCATATTTCCGGTTCATTGATGAAACCAGAGATAGGCTATATGTCTTCACTGCAGTGAATGTGGCTCGTCTGAAAAGGAAGATGGAAGCAAATGGAGTTCATGGCTAA 2949 0.4127 MASWKTTLLLLTLFLLSLFLEPLLAEATIINSIDGGMNKGCIEVERKALLEFKNGLIDPSGRLSSWVGADCCKWKGVDCNNQTGHVVKVDLKSGGDFSRLGGGFSRLGGEISDSLLDLKHLNYLDLSFNDFQGIPIPNFLGSFERLRYLNLSHARFGGMIPPHLGNLSQLRYLDLHGGDYYNFSAPLVRVHNLNWLSGLSSLKYLDLGHVNLSKATTNWMQAVNMLPFLLELHLSHCELSHFPQYSNPFVNLTSVSVIDLSYNNFNTTLPGWLFNISTLMDLYLNDATIKGPILHVNLLSLHNLVTLDLSYNNIGSEGIELVNGLSACANSSLEELNLGYNQFGGQLPDSLGLFKNLKSLDLSYNNFVGPFPNSIQHLTNLERLDLSENSISGPIPTWIGNLLRMKRLVLSNNLMNGTIPKSIGQLRELIVLYLNWNAWEGSLRFHLRPEWIPPFSLESIGVCNCYVSLKFPNWLRTQKRLDKLILINVGISDAIPEWLWKQDFLLLELSRNQLYGTLPNSLSFRQGALVDLSFNRLGGPLPLRLNVSWLYLGNNLFSGPIPLNIGESSSLEALDVSSNLLNGSIPSSISKLKDLEVIDLSNNHLSGKIPKNWNDLHRLWTIDLSKNKLSGGIPSWISSKSSLTDLILGDNNLSGEPFPSLRNCTWLYALDLGNNRFSGEIPKWIGERMSSLKQLRLRGNMFTGDIPEQLCWLSRLHILDLAVNNLSGSIPQCLGNLTALSFVTLLDRNFDDPSIHYSYSERMELVVKGQSMEFESILPIVNLIDLSSNNIWGEIPKEITTLSTLGTLNLSRNQLTGKIPEKIGAMQGLETLDLSCNCLSGPIPPSMSSITSLNHLNLSHNRLSGPIPTTNQFSTFNDPSIYEANLGLCGPPLSTNCSTLNDQDHKDEEEDEVEWDMSWFFISMGLGFPVGFWAICGSLVLKKSWRQAYFRFIDETRDRLYVFTAVNVARLKRKMEANGVHG* 983
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1427 982 SMART LRR_sd22_2 378 404 - -
Vvi1g1427 982 SMART LRR_sd22_2 826 855 - -
Vvi1g1427 982 SMART LRR_sd22_2 713 739 - -
Vvi1g1427 982 SMART LRR_sd22_2 592 618 - -
Vvi1g1427 982 SMART LRR_sd22_2 301 321 - -
Vvi1g1427 982 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 348 443 - -
Vvi1g1427 982 Gene3D Ribonuclease Inhibitor 615 906 IPR032675 -
Vvi1g1427 982 SMART LRR_RI_2 330 353 - -
Vvi1g1427 982 SMART LRR_RI_2 301 327 - -
Vvi1g1427 982 SMART LRR_RI_2 378 405 - -
Vvi1g1427 982 SMART LRR_typ_2 226 249 IPR003591 -
Vvi1g1427 982 SMART LRR_typ_2 689 713 IPR003591 -
Vvi1g1427 982 SMART LRR_typ_2 592 616 IPR003591 -
Vvi1g1427 982 SMART LRR_typ_2 252 276 IPR003591 -
Vvi1g1427 982 SMART LRR_typ_2 802 826 IPR003591 -
Vvi1g1427 982 SMART LRR_typ_2 301 328 IPR003591 -
Vvi1g1427 982 SMART LRR_typ_2 118 142 IPR003591 -
Vvi1g1427 982 SMART LRR_typ_2 378 402 IPR003591 -
Vvi1g1427 982 Pfam Leucine rich repeat N-terminal domain 45 80 IPR013210 -
Vvi1g1427 982 PRINTS Leucine-rich repeat signature 381 394 - -
Vvi1g1427 982 PRINTS Leucine-rich repeat signature 592 605 - -
Vvi1g1427 982 Gene3D Ribonuclease Inhibitor 450 614 IPR032675 -
Vvi1g1427 982 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 773 897 - -
Vvi1g1427 982 Pfam Leucine Rich repeat 301 320 IPR001611 GO:0005515
Vvi1g1427 982 Gene3D Ribonuclease Inhibitor 221 321 IPR032675 -
Vvi1g1427 982 Gene3D Ribonuclease Inhibitor 42 220 IPR032675 -
Vvi1g1427 982 PANTHER LRR RECEPTOR-LIKE KINASE 330 397 - -
Vvi1g1427 982 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 543 767 - -
Vvi1g1427 982 Pfam Leucine rich repeat 120 177 IPR001611 GO:0005515
Vvi1g1427 982 Pfam Leucine rich repeat 804 863 IPR001611 GO:0005515
Vvi1g1427 982 Pfam Leucine rich repeat 332 391 IPR001611 GO:0005515
Vvi1g1427 982 Pfam Leucine rich repeat 570 629 IPR001611 GO:0005515
Vvi1g1427 982 Gene3D Ribonuclease Inhibitor 400 449 IPR032675 -
Vvi1g1427 982 Gene3D Ribonuclease Inhibitor 322 399 IPR032675 -
Vvi1g1427 982 SUPERFAMILY RNI-like 108 447 - -
Vvi1g1427 982 SUPERFAMILY L domain-like 546 881 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1427 Vvi-Chr1 20601740 20604763 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1427 248 897 Receptor kinase-like Gene Family AT4G04220 35.947 2.64e-97 323
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1427 - - vvi:100241971 1930.22