Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1425 ATGGTTGAAGCTCTTACAATCAATTCTAATGACAGTGATCTCAACATGGCTTGCATTGAGGTAGAGCGGAAAGCGCTTCCTGAATTTAAACATGGTCTGAAAGATCCTTCAGGTAGGCTTTCTTCCTGGGTTGGTGCTGTTTGCTGCAAGTGGAGAGGTGTGGATTGCAACAACCAAACAGGAAATGTTGTCAAGGTTGACCTCAGACAACATGACTTCTTACCGTTGGGTGGTGAGATAAGTGATTCCTTACTTGACTTGAAACATTTAACTTACCTGGACCTAAGTCTTAATGATTTTCAAGGAATTCCAATCCCAAATTTCTTGGGCTCATTTGAAAGTCACTTCCCTCAGTACTCCAATCCGTTTGTTAATTTGACTTCTGCTTTGGTCATTGATCTCTCCGGAAACAATTTCAACACTACTTTGCCTGGCTGGTTGTTTAACATCAGTACCCTTACAGATCTTTATTTAAATGGTGCTACAATTAAAGGTCCGATTCCCCATGTTAACTTACGATGCCTTCGCAACTTGGTGACCTTAGATCTCTCATACAATAGTATTGGAGGTGAAGGAATTGAATTCCTGAATCGATTATCAGCATGCACTAATAATTCCTTGGAAGAGTTAAACTTGGGCGGTAATCAAGTCAGTGGTCAGTTGCCAGATTCATTAGGGCTCTTTAAGAATTTAAAATCCCTGGACTTGAGCTATAATAGTTTTGTTGGTCCCTTCCCCAATTCAATTCAACACCTTACCAACTTAGAGAGTCTTTATCTGAGAAAAAACTCCATCTCAGGTCCAATTCCAACATGGATTGGAAACTTGCTGCGGATGAAGAGACTTAGCTTGTCATTCAATCTAATGAATGGGACGATTCCAGAAAGTATTGGACAACTTAGAGAGCTGACTGAGTTGTATCTTAATTGGAATGCTTGGGAAGGGGTAATATCTGAAATTCATTTCAGTAATCTTACAAAACTGGAGTATTTCTCTTTACACTTATCACCCAAAAACCAGTCTCTCCGTTTTCACGTGAGACCTGAATGGATTCCTCCTTTCAGCCTCTTGTATATCCGTATTTCCAACTGCTATGTATCTCCCAAGTTCCCCAACTGGCTTAGAACTCAAAAAAGACTTAACACAATAGTTCTTAAAAATGTGGGGATTTCAGATACAATACCAGAATGGCTTTGGAAACTAGATTTTTCATGGTTAGATCTTTCTAAAAACCAATTGTATGGAAAGCTTCCCAACTCATTATCCTTTAGCCGAAAAGCAGTCGAGGTGGATTTAAGCTTCAACCACTTGGTGGGCCGATTCCCACTTTGGTTTAATGTGATAGAGCTCTTTCTGGGAAACAATTTATTTTCTGGTCCAATTCCCTTGAACATCGGGGAATTATCGAGTTTGGAAGTCCTTGATATTTCTGGTAAGTTGTTAAATGGCAGCATCCCTTCATCAATTAGTAAACTAAAGGATTTGAACGAAATTGATCTCTCAAGCAATCATTTTTCTGGAAGGATTCCAAAGAATTGGAATGATTTGCACAATCTTGACACCATAGATCTATCCAAGAACAAACTGTCAGGATCCATCCCACAATGCTTAGGCAATTTGACTGCTTTACGTTCTGTGACCTTATTAGACATCGAATTTGATGACAACCCCGGGAGTCATTTTGCCTATTCAGAGCGCATGGAGCTAGTTGTGAAGGGACAAGACATGGAATTTGATAGCATACTGTCAATTGTGAATTTGATTGATCTTTCTAGCAATAACATTTGGGGAGAGATCCCAGAAGAGATCACAAATCTCTCGACCCTGGGTACCTTGAATTTGTCCCAAAACCAATTGATTGGAAAGATACCTGAGAAGATCGGAACCATGCAAGGGCTAGAAACTCTTGACCTCTCATGCAACTGCCTTTCAGGTCCAATTCCTCCAAGCATGTCTTCTATAACCTCATTGAACCATTTGAACCTATCACATAACCTCCTGTCAGGACCAATTCCAACAACCAACCAGTTCTCGACATTCAATGATCCATCCATTTATGAGGCGAACCTGGGACTTTGTGGGCCTCCATTGTCAACCAACTGCTCCACTCTAAATGATCAAGATCACACAGATGAGGAGGAAGATGAAGATGAATGGGACCTGTCATGGTTCTTCATAAGCATGGGATTGGGCTTTCCGGTGGGATTTTGGGCTGTATGTGGCAGTTTGGCTCTAAAGAAGTCTTGGAGGCAGGCTTATTTCCGGTTCATTGATGAAACCAGAGATAGGTTATATGTCTTCGCTGCAGTGAATGTGGCTCGTCTGAAAAGGAAGATGGAAACAGATGGAGTTCATGGCTGA 2361 0.4096 MVEALTINSNDSDLNMACIEVERKALPEFKHGLKDPSGRLSSWVGAVCCKWRGVDCNNQTGNVVKVDLRQHDFLPLGGEISDSLLDLKHLTYLDLSLNDFQGIPIPNFLGSFESHFPQYSNPFVNLTSALVIDLSGNNFNTTLPGWLFNISTLTDLYLNGATIKGPIPHVNLRCLRNLVTLDLSYNSIGGEGIEFLNRLSACTNNSLEELNLGGNQVSGQLPDSLGLFKNLKSLDLSYNSFVGPFPNSIQHLTNLESLYLRKNSISGPIPTWIGNLLRMKRLSLSFNLMNGTIPESIGQLRELTELYLNWNAWEGVISEIHFSNLTKLEYFSLHLSPKNQSLRFHVRPEWIPPFSLLYIRISNCYVSPKFPNWLRTQKRLNTIVLKNVGISDTIPEWLWKLDFSWLDLSKNQLYGKLPNSLSFSRKAVEVDLSFNHLVGRFPLWFNVIELFLGNNLFSGPIPLNIGELSSLEVLDISGKLLNGSIPSSISKLKDLNEIDLSSNHFSGRIPKNWNDLHNLDTIDLSKNKLSGSIPQCLGNLTALRSVTLLDIEFDDNPGSHFAYSERMELVVKGQDMEFDSILSIVNLIDLSSNNIWGEIPEEITNLSTLGTLNLSQNQLIGKIPEKIGTMQGLETLDLSCNCLSGPIPPSMSSITSLNHLNLSHNLLSGPIPTTNQFSTFNDPSIYEANLGLCGPPLSTNCSTLNDQDHTDEEEDEDEWDLSWFFISMGLGFPVGFWAVCGSLALKKSWRQAYFRFIDETRDRLYVFAAVNVARLKRKMETDGVHG* 787
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1425 786 Pfam Leucine Rich repeat 203 219 IPR001611 GO:0005515
Vvi1g1425 786 Pfam Leucine Rich repeat 176 195 IPR001611 GO:0005515
Vvi1g1425 786 Pfam Leucine Rich repeat 88 101 IPR001611 GO:0005515
Vvi1g1425 786 SMART LRR_typ_2 87 111 IPR003591 -
Vvi1g1425 786 SMART LRR_typ_2 175 206 IPR003591 -
Vvi1g1425 786 SMART LRR_typ_2 516 540 IPR003591 -
Vvi1g1425 786 SMART LRR_typ_2 606 630 IPR003591 -
Vvi1g1425 786 SMART LRR_typ_2 252 276 IPR003591 -
Vvi1g1425 786 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 122 344 - -
Vvi1g1425 786 Pfam Leucine rich repeat N-terminal domain 22 57 IPR013210 -
Vvi1g1425 786 SUPERFAMILY L domain-like 39 445 - -
Vvi1g1425 786 SMART LRR_sd22_2 175 195 - -
Vvi1g1425 786 SMART LRR_sd22_2 252 278 - -
Vvi1g1425 786 SMART LRR_sd22_2 630 659 - -
Vvi1g1425 786 SMART LRR_sd22_2 516 542 - -
Vvi1g1425 786 SMART LRR_sd22_2 300 327 - -
Vvi1g1425 786 Pfam Leucine rich repeat 608 667 IPR001611 GO:0005515
Vvi1g1425 786 Pfam Leucine rich repeat 253 311 IPR001611 GO:0005515
Vvi1g1425 786 Pfam Leucine Rich Repeat 230 252 IPR001611 GO:0005515
Vvi1g1425 786 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 577 701 - -
Vvi1g1425 786 Gene3D Ribonuclease Inhibitor 200 351 IPR032675 -
Vvi1g1425 786 Gene3D Ribonuclease Inhibitor 402 705 IPR032675 -
Vvi1g1425 786 PANTHER LRR RECEPTOR-LIKE KINASE 18 113 - -
Vvi1g1425 786 SUPERFAMILY L domain-like 202 685 - -
Vvi1g1425 786 Gene3D Ribonuclease Inhibitor 19 199 IPR032675 -
Vvi1g1425 786 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 348 554 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1425 Vvi-Chr1 20583256 20586135 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1425 13 701 Receptor kinase-like Gene Family AT4G04220 29.911 1.20e-76 263
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1425 - - vvi:104880714 1055.05