Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1421 ATGCCAACACTGGAGCAGCTGCGTCTACGGGGCAATATGTTGACAGGAGATATTCCTGAGCAATTGTGTTGGCTTTCTGATCTCCACATTTTGGATCTTGCAGTGAACAATTTATCAGGATCCATCCCACAATGCGTAGGCAATTTAACTGCTTTAAGTTTTGTGACCTTATTAGACAAAAATTTTGACGACCCCAGTGGTCGTGCCGCCTATTCGGAGCGCATGGAGCTAGTTGTAAAGGGACAAAATATGGAATTTGATAGCATATTGCCAATTGTGAAGTTGATAGATCTTTCTAGCAATAACATTTGGGGAGAGATCCCAAAAGAGATCACAAATCTCTCGACCCTGGGTACCTTGAATTTGTCCCGAAACCAGTTGACTGGAAAGATACCTGAGAAGATTGGAGCCATGCAAGGGCTAGAAACTCTTGACCTCTCATGCAATTGCCTGTCAGGCCCAATTCCTCCGAGCATGTCTTCTATAACCTCATTGAACCATTTGAACCTATCGCATAACCGCCTGTCAGGACCAATTCCAACAACCAACCAGTTCTCGACATTCAACGATCCATCCATTTATGAGGCGAACCTGGGACTTTATGGGCCTCCATTGTCAACCAACTGCTCCACCAACTGCTCCACTTTAAATGATCAAGATCACAAAGATGAGGAGGAAGATGAAGATGAATGGGACATGTCATGGTTCTTCATAAGCATGGGATTGGGCTTTCCGGTGGGATTTTGGGCTGTATGTGGCAGTTTGGTTCTAAAGAAGTCTTGGAGGCAGGCATATTTCCGGTTCATTGATGAAACCAGAGATAGGCTATATGTCTTCACTGCAGTGAATGCGGCTTGTCTGAAAAGGAAGATGGAAGCAAATGGAGTTCATGGCTAA 897 0.4459 MPTLEQLRLRGNMLTGDIPEQLCWLSDLHILDLAVNNLSGSIPQCVGNLTALSFVTLLDKNFDDPSGRAAYSERMELVVKGQNMEFDSILPIVKLIDLSSNNIWGEIPKEITNLSTLGTLNLSRNQLTGKIPEKIGAMQGLETLDLSCNCLSGPIPPSMSSITSLNHLNLSHNRLSGPIPTTNQFSTFNDPSIYEANLGLYGPPLSTNCSTNCSTLNDQDHKDEEEDEDEWDMSWFFISMGLGFPVGFWAVCGSLVLKKSWRQAYFRFIDETRDRLYVFTAVNAACLKRKMEANGVHG* 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1421 298 PANTHER LRR RECEPTOR-LIKE KINASE 2 272 - -
Vvi1g1421 298 SUPERFAMILY RNI-like 1 188 - -
Vvi1g1421 298 Gene3D Ribonuclease Inhibitor 1 216 IPR032675 -
Vvi1g1421 298 PRINTS Leucine-rich repeat signature 162 175 - -
Vvi1g1421 298 PRINTS Leucine-rich repeat signature 117 130 - -
Vvi1g1421 298 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 85 209 - -
Vvi1g1421 298 Pfam Leucine rich repeat 116 175 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1421 Vvi-Chr1 20537176 20538072 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1421 7 276 Miscellaneous Gene Families AT1G74190 33.438 3.26e-38 141
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1421 - - vvi:109123485 584.719