Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1420 ATGTGTATTAATCTATCGGATGCATTAAGAAGCTCCCCTCCAAAGACTACCATTTCACACATGCCTGTCCACCAGGATGGCTCTTGCAATGGCTTACAACACCATGCTGCCCTTGGAAGGGACAAGGTAGTGGAATTTTCTATTTTTGGTTGA 153 0.4444 MCINLSDALRSSPPKTTISHMPVHQDGSCNGLQHHAALGRDKVVEFSIFG* 51
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1420 50 Pfam DNA-dependent RNA polymerase 1 43 IPR046950 -
Vvi1g1420 50 PANTHER DNA-DIRECTED RNA POLYMERASE, MITOCHONDRIAL 2 43 IPR002092 GO:0003677|GO:0003899|GO:0006351
Vvi1g1420 50 ProSitePatterns Bacteriophage-type RNA polymerase family active site signature 1. 22 33 IPR002092 GO:0003677|GO:0003899|GO:0006351
Vvi1g1420 50 SUPERFAMILY DNA/RNA polymerases 2 43 IPR043502 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1420 Vvi-Chr1 20529632 20530261 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1420 K10908 - tcc:18610154 83.1889