Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1417 ATGGCGACCAGGAAAACCTTCATCATATTTCTTATCCTTCTTTTGGTTCCTTTATTTCTAAAATTTTTCTTACTTGAAGCCCTTGTGATCAATTCCACTGATGGTGATAGGGACGTAGTTTGCATTGAGATGGAGCGGAAAGCCCTTCTTAAATTCAAAGGTGGTCTGGAAGACCCTTCAGGTCGGCTTTCTTCTTGGGTTGGTGGAGATTGTTGCAAATGGCAAGGCGTGGATTGCAATAATGGGACAGGACATGTTATAAAGCTAGACCTCAAAAACCCTTATCAATCCGATGAAGCAGCATTTCCCTTGTCTCGTTTAATTGGCCAGATAAGTGATTCCTTGCTTGACTTGAAATATTTGAATTACCTGGATTTGTCTAAAAATGAATTGAGCGGCCTGATCCCTGATTCAATAGGAAACCTTGACAACTTAAGATATCTTGATCTTAGTGACAACTCAATCTCGGGTTCAATTCCAGCATCCATTGGAAGGCTGTTGTTGTTGGAGGAATTGGACCTCTCTCACAACGGAATGAATGGGACCATCCCAGAAAGTATAGGACAACTTAAAGAGCTCCTTACCTTAACATTTGATTGGAATCCTTGGAAGGGGAGGGTATCCGAAATTCACTTCATGGGTCTTATAAAACTGGAATATTTCTCCTCATACTTATCACCGGCTACAAACAACTCTCTGGTTTTCGATATTACAAGTGACTGGATTCCTCCTTTCAGTCTCAAGGTTATCAGAATCGGCAACTGCATACTGTCTCAAACATTCCCTGCCTGGCTCGGAACTCAGAAGGAACTTTACCAAATAATCCTCCATAATGTTGGGATTTCAGACACTATACCAGAATGGCTTTGGAAGTTGTCTCCACAGCTTGGGTGGTTAGATCTTTCCAGGAACCAATTGAGGGGAAAGCCTCCCAGTCCCTTATCCTTCAGCACATCGCATGGATGGAGTATGGCAGATTTAAGTTTCAACCGCTTAGAGGGTCCACTCCCACTTTGGTATAATTTGACATATCTTGTTTTGGGGAACAATTTATTTTCAGGTCCAGTTCCGTCCAATATTGGGGAATTATCAAGTTTGAGAGTCCTGACTATTTCGGGGAACTTGTTGAATGGGACCATCCCATCATCATTAACTAACCTGAAGTATTTGAGGATTATTGATCTCTCAAATAACCATTTATCTGGAAAGATTCCCAATCATTGGAAAGATATGGAAATGCTTGGCATCATTGATCTATCCAAGAACAGACTGTATGGCGAGATTCCAAGTTCCATATGTTCAATCCATGTAATTTACTTGTTGAAACTGGGCGACAACCATCTTTCTGGGGAACTCTCTCCAAGCTTACAAAACTGCAGTCTGTACTCCCTTGATCTTGGAAATAACAGGTTTTCAGGTGAGATACCCAAATGGATCGGAGAAAGAATGTCATCACTGAAGCAGCTACGCTTACGAGGCAACATGCTGACCGGAAATATTCCTGAGCAACTATGTGGGCTTTCTGATCTCCGCATTTTGGACCTTGCACTTAATAATCTATCAGGATCCATCCCTCCATGCTTAGGCCATTTGAGTGCTATGAATCATGTGACCTTATTAGATCCTTCTCCAGATTACCTATATACTGATTATTACTACACGGAGGGAATGGAGCTAGTTGTGAAGGGAAAAGAAATGGAATTTGAGAGGATACTTTCAATTGTGAAGTTGATAGACCTTTCTAGGAATAACTTATGGGGAGAGATTCCACATGGGATTAAAAATCTCTCAACCTTGGGTACCTTGAATTTGTCCCGGAACCAATTGACTGGAAAGATACCCGAGGACATTGGAGCCATGCAAGGGTTAGAAACTCTGGACCTCTCGAGCAACCGCCTTTCAGGCCCAATTCCTCTGAGCATGGCTTCTATAACCTCATTGAGCGATTTGAACTTGTCGCATAACCTCCTGTCAGGACCCATTCCAACAACCAACCAATTCCCTACATTCAATGATCCATCCATGTATGAGGGTAACCTGGCACTTTGTGGGCTTCCATTGTCAACCCAGTGCTCCACTCCTAATGAAGATCACAAAGATGAGGAAGATGAGAAGGAAGATCATGACGATGGGTGGGAAACATTGTGGTTCTTCACAAGCATGGGATTGGGCTTCCCGGTGGGATTTTGGGCTGTATGTGGCACTTTGGCTCTAAAAAAGTCTTGGAGGCATGCTTATTTTCGGTTTGTTGGTGAAGCGAAAGATAGGATGTATGTCTTTATTGCAGTGAATGTGGCTCGTTTCCGAAGGAAGATGAAAAGAAATGGTGGAGCTCAAGGTTGA 2343 0.4264 MATRKTFIIFLILLLVPLFLKFFLLEALVINSTDGDRDVVCIEMERKALLKFKGGLEDPSGRLSSWVGGDCCKWQGVDCNNGTGHVIKLDLKNPYQSDEAAFPLSRLIGQISDSLLDLKYLNYLDLSKNELSGLIPDSIGNLDNLRYLDLSDNSISGSIPASIGRLLLLEELDLSHNGMNGTIPESIGQLKELLTLTFDWNPWKGRVSEIHFMGLIKLEYFSSYLSPATNNSLVFDITSDWIPPFSLKVIRIGNCILSQTFPAWLGTQKELYQIILHNVGISDTIPEWLWKLSPQLGWLDLSRNQLRGKPPSPLSFSTSHGWSMADLSFNRLEGPLPLWYNLTYLVLGNNLFSGPVPSNIGELSSLRVLTISGNLLNGTIPSSLTNLKYLRIIDLSNNHLSGKIPNHWKDMEMLGIIDLSKNRLYGEIPSSICSIHVIYLLKLGDNHLSGELSPSLQNCSLYSLDLGNNRFSGEIPKWIGERMSSLKQLRLRGNMLTGNIPEQLCGLSDLRILDLALNNLSGSIPPCLGHLSAMNHVTLLDPSPDYLYTDYYYTEGMELVVKGKEMEFERILSIVKLIDLSRNNLWGEIPHGIKNLSTLGTLNLSRNQLTGKIPEDIGAMQGLETLDLSSNRLSGPIPLSMASITSLSDLNLSHNLLSGPIPTTNQFPTFNDPSMYEGNLALCGLPLSTQCSTPNEDHKDEEDEKEDHDDGWETLWFFTSMGLGFPVGFWAVCGTLALKKSWRHAYFRFVGEAKDRMYVFIAVNVARFRRKMKRNGGAQG* 781
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1417 780 SMART LRR_typ_2 118 141 IPR003591 -
Vvi1g1417 780 SMART LRR_typ_2 483 506 IPR003591 -
Vvi1g1417 780 SMART LRR_typ_2 363 387 IPR003591 -
Vvi1g1417 780 SMART LRR_typ_2 507 531 IPR003591 -
Vvi1g1417 780 SMART LRR_typ_2 142 166 IPR003591 -
Vvi1g1417 780 SMART LRR_typ_2 596 620 IPR003591 -
Vvi1g1417 780 PANTHER LRR RECEPTOR-LIKE KINASE 391 752 - -
Vvi1g1417 780 Pfam Leucine rich repeat 576 633 IPR001611 GO:0005515
Vvi1g1417 780 Pfam Leucine rich repeat 113 155 IPR001611 GO:0005515
Vvi1g1417 780 Pfam Leucine rich repeat 460 520 IPR001611 GO:0005515
Vvi1g1417 780 Pfam Leucine rich repeat 365 424 IPR001611 GO:0005515
Vvi1g1417 780 Gene3D Ribonuclease Inhibitor 340 700 IPR032675 -
Vvi1g1417 780 PRINTS Leucine-rich repeat signature 121 134 - -
Vvi1g1417 780 PRINTS Leucine-rich repeat signature 620 633 - -
Vvi1g1417 780 Pfam Leucine rich repeat N-terminal domain 44 80 IPR013210 -
Vvi1g1417 780 SUPERFAMILY L domain-like 41 339 - -
Vvi1g1417 780 SUPERFAMILY RNI-like 326 659 - -
Vvi1g1417 780 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 103 339 - -
Vvi1g1417 780 ProSiteProfiles Leucine-rich repeat profile. 144 166 IPR001611 GO:0005515
Vvi1g1417 780 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 340 541 - -
Vvi1g1417 780 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 566 691 - -
Vvi1g1417 780 Gene3D Ribonuclease Inhibitor 43 219 IPR032675 -
Vvi1g1417 780 Gene3D Ribonuclease Inhibitor 220 339 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1417 Vvi-Chr1 20478419 20480761 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1417 109 743 Receptor kinase-like Gene Family AT4G04220 34.691 1.92e-91 303
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1417 - - vvi:100855337 1466.06