Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1411 ATGGTTGAAGCTCTTACAATCAATTCTAATGACATTGATCTCAACAAAGCTTGCATTGAGGAAGAGCGGAAAGCGCTTCTTGAATTTAGACATGGTCTGAAAGATCCTTCAGGTAGGCTTTCTTCCTGGGTTGGTGCTGATTGCTGCAAGTGGACAGGTGTGGATTGCAACAATCGGACAGGGAATGTTGTCAAGGTTGACCTCAGAGATCGTGGCTTCTTTCTTTTGGGTGGTGAGATAAGTGGTTCCTTACTTGACTTGAAACATTTAACTTACCTGGACCTAAGTCTTAATGATTTTCAAGGAATTCCAATTCCAAATTTCTTGGGCTCATTTGAAAGGTTGAGATACCTTAATCTCTCTAATGCAGCATTTGGTGGAATGATTCCTCCTCATCTTGGAAATTTATCACAGTTACGTTATCTTGATCTTTTTGGAGGAGGAGATTATCCAATGAGGGTTTCTAATTTAAATTGGCTTTCTGGTCTTTCTTCTTTAAAATACCTTGATCTGGGGTATGTGGACCTTAGTAAAACAACCACAAATTGGATGCGAGCTGTAAACATGCTTCCATTTTTGTTAGAATTACATTTGTCCGTTTGTGAACTCAGTCACTTCCCTCACTACTCCAATCCATTTGTTAATTTGACTTCGGTTTTGGTCATTGATCTCTCCTACAACAATTTCAACACTACTTTGCCTGGCTGGTTGTTTAACGTCAGTACCCTTACGGATCTTTATTTAAATGGTGGTACAATTAAAGGTCCGATTCCCCATGTTAACTTGCGATGCCTTTGCAACTTGGTGACCTTAGATCTCTCACACAATAGTATTGGAGGTGAAGGAATTGAATTCCTGAGTCGATTATCAGCATGCACTAATAATTCCTTGGAAGAGTTAAACTTGGGCGGTAATCAAGTCAGTGGTCCAATTCCAACATGGATTGGAAACTTGCTGCGGATGAAGAGACTTGGCATGTCATTCAATCTAATGAATGGGACGATTCCAGAAAGTATTGGACAACTTAGAGAGCTAACTGAGTTGTATCTTGATTGGAATTCTTGGGAAGGGGTAATATCTGAAATTCATTTCAGTAATCTTACAAAACTGGAATATTTCTCTTTACACTTATCACCCAAAAACCAGTCTCTCCGTTTTCACGTGAGACCTGAATGGATTCCTCCTTTCAGCCTCTTGTATATCCGTATTTCCAACTGCTATGTATCTCCCAAGTTCCCCAACTGGCTTAGAACTCAAAAAAGACTTAACACAATAGTTCTTAAAAATGTGGGGATTTCAGATACAATACCAGAATGGCTTTGGAAACTAGATTTTTCATGGTTAGATATTTCTAAAAACCAATTGTATGGAAAGCTTCCCAACTCATTATCCTTTAGCCCAGGAGCAGTCGTGGTGGATTTAAGCTTCAACCGCTTGGTGGGCCGATTCCCACTTTGGTTTAATGTGATAGAGCTCTTTCTGGGAAACAATTTATTTTCTGGTCCAATTCCCTTGAACATCGGGGAATTATCGAGTTTGGAAATCCTTGATATTTCTGGTAACTTGTTAAATGGCAGCATCCCTTCATCAATTAGTAAACTAAAGGATTTGAACGAAATTGATCTCTCAAACAATCATTTATCTGGAAAGATTCCAAAGAATTGGAATGATTTGCACCATCTTGACACCATAGATCTATCTAAGAACAAACTGTCAGGTGGGATTCCAAGTTCGATGTGTACAATATCTTTATTTAACTTGATATTGGGCGACAACAATCTTTCTGGGAAACTCTCTCAAAGCTTACAAAACTGCACAGAGCTGCACTCCCTTGATCTTGGAAATAACAGGTTTTCGGGCGAGATACCCAAATGGATTGGAGAAAAAATGTCATCATTGAGGCAACTTCGTTTACGAGGCAACATGTTGACAGGAGATATTCCTGAACAACTGTGTGGGCTTTCTTATCTCCACATTTTGGATCTTGCGCTTAACAATTTATCAGGATCCATCCCACAATGCTTAGGCAATTTGACTGCTTTACGTTCTGTGACCTTATTAAACATAGAATCTGATGACAACATCGGGGGGCGTGGCTCTTATTCAGGGCGCATGGAGCTAGTTGTGAAGGGACAATATATGGAATTTGATAGCATACTGCCAATTGTGAATTTGATTGATCTTTCTAGCAATAACATTTGGGGAGAGATCCCAGAAGAGATCACAAATCTCCCGACCCTGGGTACCTTGAATTTGTCCCAAAACCAATTGATTGGAAAGATACCTGAGAGGATCGAAGCCATGCAAGGGCTAGAAACTCTTGACCTCTCATGCAACCGCCTTTTAGGCTCAATTCCTCCGAGCATGTCTTCTCTAACCTTATTGAACCATTTGAACCTATCGCATAACCTCCTATCAGGACCACTTCCAACAACCAACCAGTTCTCGACATTCAACAATTCGTCCATTTATGAGGCGAACCTGGGACTTTGTGGGCCTCCATTGTCAACCAACTGCTCCACTTTAAATGATCAAGATCACAAAGATGAGGAGAAAGATGAAGATGAAGATGAATGGGACCTGTCATGGTTCTTCATAAGCATGGGATTGGGCTTTCCGGTGGGATTTTGGGTTGTATGTGGCAGTTTGGCTCTAAAGCAGTCTTGGAGGCAGGCTAATTTCCGGTTCATTGATGAAACCAGAGATAGGCTATATGTCTTCACTGCAGTGAATGTGGCTCGTCTGAAAAGGAAGATGGAAACAGATGGAGTTCATGGCTGA 2781 0.407 MVEALTINSNDIDLNKACIEEERKALLEFRHGLKDPSGRLSSWVGADCCKWTGVDCNNRTGNVVKVDLRDRGFFLLGGEISGSLLDLKHLTYLDLSLNDFQGIPIPNFLGSFERLRYLNLSNAAFGGMIPPHLGNLSQLRYLDLFGGGDYPMRVSNLNWLSGLSSLKYLDLGYVDLSKTTTNWMRAVNMLPFLLELHLSVCELSHFPHYSNPFVNLTSVLVIDLSYNNFNTTLPGWLFNVSTLTDLYLNGGTIKGPIPHVNLRCLCNLVTLDLSHNSIGGEGIEFLSRLSACTNNSLEELNLGGNQVSGPIPTWIGNLLRMKRLGMSFNLMNGTIPESIGQLRELTELYLDWNSWEGVISEIHFSNLTKLEYFSLHLSPKNQSLRFHVRPEWIPPFSLLYIRISNCYVSPKFPNWLRTQKRLNTIVLKNVGISDTIPEWLWKLDFSWLDISKNQLYGKLPNSLSFSPGAVVVDLSFNRLVGRFPLWFNVIELFLGNNLFSGPIPLNIGELSSLEILDISGNLLNGSIPSSISKLKDLNEIDLSNNHLSGKIPKNWNDLHHLDTIDLSKNKLSGGIPSSMCTISLFNLILGDNNLSGKLSQSLQNCTELHSLDLGNNRFSGEIPKWIGEKMSSLRQLRLRGNMLTGDIPEQLCGLSYLHILDLALNNLSGSIPQCLGNLTALRSVTLLNIESDDNIGGRGSYSGRMELVVKGQYMEFDSILPIVNLIDLSSNNIWGEIPEEITNLPTLGTLNLSQNQLIGKIPERIEAMQGLETLDLSCNRLLGSIPPSMSSLTLLNHLNLSHNLLSGPLPTTNQFSTFNNSSIYEANLGLCGPPLSTNCSTLNDQDHKDEEKDEDEDEWDLSWFFISMGLGFPVGFWVVCGSLALKQSWRQANFRFIDETRDRLYVFTAVNVARLKRKMETDGVHG* 927
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1411 926 FunFam Leucine-rich repeat receptor-like kinase 21 140 - -
Vvi1g1411 926 PANTHER LRR RECEPTOR-LIKE KINASE 492 578 - -
Vvi1g1411 926 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 489 698 - -
Vvi1g1411 926 Pfam Leucine rich repeat N-terminal domain 20 57 IPR013210 -
Vvi1g1411 926 SMART LRR_sd22_2 768 794 - -
Vvi1g1411 926 SMART LRR_sd22_2 510 539 - -
Vvi1g1411 926 SMART LRR_sd22_2 265 285 - -
Vvi1g1411 926 SMART LRR_sd22_2 558 584 - -
Vvi1g1411 926 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 212 488 - -
Vvi1g1411 926 Gene3D Ribonuclease Inhibitor 285 378 IPR032675 -
Vvi1g1411 926 Pfam Leucine rich repeat 770 805 IPR001611 GO:0005515
Vvi1g1411 926 Pfam Leucine rich repeat 512 571 IPR001611 GO:0005515
Vvi1g1411 926 Gene3D Ribonuclease Inhibitor 490 556 IPR032675 -
Vvi1g1411 926 SUPERFAMILY RNI-like 75 406 - -
Vvi1g1411 926 Gene3D Ribonuclease Inhibitor 18 185 IPR032675 -
Vvi1g1411 926 Gene3D Ribonuclease Inhibitor 379 489 IPR032675 -
Vvi1g1411 926 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 716 839 - -
Vvi1g1411 926 SUPERFAMILY L domain-like 488 823 - -
Vvi1g1411 926 ProSiteProfiles Leucine-rich repeat profile. 267 290 IPR001611 GO:0005515
Vvi1g1411 926 SMART LRR_typ_2 510 534 IPR003591 -
Vvi1g1411 926 SMART LRR_typ_2 87 111 IPR003591 -
Vvi1g1411 926 SMART LRR_typ_2 265 296 IPR003591 -
Vvi1g1411 926 SMART LRR_typ_2 768 792 IPR003591 -
Vvi1g1411 926 SMART LRR_typ_2 190 213 IPR003591 -
Vvi1g1411 926 SMART LRR_typ_2 216 240 IPR003591 -
Vvi1g1411 926 SMART LRR_typ_2 744 767 IPR003591 -
Vvi1g1411 926 SMART LRR_typ_2 558 582 IPR003591 -
Vvi1g1411 926 SMART LRR_typ_2 630 654 IPR003591 -
Vvi1g1411 926 Gene3D Ribonuclease Inhibitor 186 284 IPR032675 -
Vvi1g1411 926 Gene3D Ribonuclease Inhibitor 557 848 IPR032675 -
Vvi1g1411 926 SUPERFAMILY L domain-like 364 487 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1411 Vvi-Chr1 20349395 20352319 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1411 18 890 Receptor kinase-like Gene Family AT3G05660 31.774 3.03e-90 304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1411 - - vvi:100855162 1553.11