Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1409 ATGGCGACCAGGAAAACCTTCATCCTATTTCTTGTCCTTCTTTTGCTTCCTTTATTTCTCGAATTTTTCTTACTTGAAGCCCTTGTGATCAATTCCACTGATGGTGATAGGGACGTGGTTTGCATTGAGATGGAGCAGAAAGCCCTTCTTAAATTCAAAGGTGGTCTGGAAGATCCTTCAGGTCGGCTTTCTTCTTGGGTTGGTGGAGATTGTTGCAAATGGCGAGGCGTGGATTGCAATAATGAGACAGGACATGTTATAAAGCTAGACCTCAAAAACCCTTATCAATCCGATGAAGCAGCATTTCCCTTGTCTCGTTTAATTGGCCAGATAAGTGATTCCTTGCTTGATTTGAAATATTTGAATTACCTGGATTTGTCTAAAAATGAATTGAGCGGCCTGATCCCTGATTCAATAGGAAACCTTGACCACTTAAGATATCTTGATCTTAGGGACAACTCAATCTCGGGTTCAATTCCAGCATCCATTGGAAGGCTGTTGTTGTTGGAGGAATTGGACCTCTCTCACAACGGAATGAATGGGACCATCCCAGAAAGTATAGGACAACTGAAAGAGCTCCTTAGCTTAACACTTGATTGGAATCCTTGGAAGGGGAGGGTATCCGAAATTCACTTCATGGGTCTTATAAAACTGGAATATTTCTCCTCATACTTATCACCGGCTACAAACAACTCTCTGGTTTTCGATATTACAAGTGACTGGATTCCTCCTTTCAGTCTCAAGGTTATCAGAATGGGCAACTGCATACTGTCTCAAACATTCCCTTCCTGGCTCGGAACTCAGAAGGAACTTTACCGAATAATCCTCCGTAATGTTGGGATTTCAGACACTATACCAGAATGGCTTTGGAAGTTGTCTCCACAGCTTGGGTGGTTAGATCTTTCCAGGAACCAATTGAGGGGAAAACCTCCCAGTCCCTTATCCTTCAACACATCGCATGGATGGAGTATGGCAGATTTAAGTTTCAACCGCTTAGAGGGTCCACTCCCACTTTGGTATAATTTGACGTATCTTGTTTTGGGGAACAATTTATTTTCAGGTCCAGTTCCCTCCAATATTGGGGAATTATCAAGTTTGAGAGTCCTGGTTGTTTCGGGGAACTTGTTGAATGGGACCATCCCATCATCATTAACTAACCTGAAGAATTTGAGGATTATTGATCTCTCAAATAACCATTTATCTGGAAAGATTCCCAATCATTGGAATGATATGGAAATGCTTGGCATCATTGATCTATCCAAGAACAGACTGTATGGCGAGATTCCAAGTTCCATATGTTCAATCCATGTAATTTACTTTTTGAAACTGGGCGACAACAATCTTTCTGGGGAACTCTCTCCAAGCTTACAAAACTGCAGTCTGTACTCCCTTGATCTTGGAAATAACAGGTTTTCAGGTGAGATACCCAAATGGATCGGAGAAAGAATGTCATCACTGAAGCAGCTACGCCTACGAGGCAACATGCTGACCGGAAATATTCCTGAACAACTATGTGGGCTTTCTGATCTCCGCATTTTGGACCTTGCACTAAATAATCTATCAGGATCCATCCCTCCATGCTTAGGCCATTTGAGTGCTATGAATCATGTGACCTTATTAGGTCCTTCTCCAGATTACCTATATACTGATTATTATTACTACAGGGAGGGAATGGAGCTAGTTCTGAAGGGAAAAGAAATGGAATTTGAGAGGATACTTTCAATTGTGAAGTTGATAGACCTTTCTAGGAATAACTTATCGGGAGTGATTCCACATGGGATTGCAAATCTCTCAACCTTGGGTACCTTGAATTTGTCCTGGAACCAATTGACTGGAAAGGTACCCGAGGACATTGGAGCCATGCAAGGGTTAGAAACTCTGGACTTCTCGAGCAACCGCCTTTCAGGCCCAATTCCTCTGAGCATGGCTTCTATAACCTCATTGAGCCATTTGAACTTGTCGCATAACCTCCTGTCAGGACCCATTCCAACAACCAACCAGTTCCCTACATTCGATGATCCATCCATGTATGAGGGTAACCTGGGACTTTGTGGGCTTCCATTGTCAACCCAGTGCTCCACTCCTAATGAAGATCACAAAGATGAGGAAGATGAGAAGGAAGATCATGACGATGGGTGGGAAACATTATGGTTCTTCACAAGCATGGGATTGGGCTTCCCGGTGGGATTTTGGGCTGTATGTGGCACTTTGGCTCTAAAAAAGTCTTGGAGGCATGCTTATTTTCGGTTTGTTGGTGAAGCAAAAGATAGGATGTATGTCTTTATTGCAGTGAATGTGGCTCGTTTCCAAAGGAAGATGAAAAGAAATGGTGGAGCTCATGGTTGA 2346 0.4284 MATRKTFILFLVLLLLPLFLEFFLLEALVINSTDGDRDVVCIEMEQKALLKFKGGLEDPSGRLSSWVGGDCCKWRGVDCNNETGHVIKLDLKNPYQSDEAAFPLSRLIGQISDSLLDLKYLNYLDLSKNELSGLIPDSIGNLDHLRYLDLRDNSISGSIPASIGRLLLLEELDLSHNGMNGTIPESIGQLKELLSLTLDWNPWKGRVSEIHFMGLIKLEYFSSYLSPATNNSLVFDITSDWIPPFSLKVIRMGNCILSQTFPSWLGTQKELYRIILRNVGISDTIPEWLWKLSPQLGWLDLSRNQLRGKPPSPLSFNTSHGWSMADLSFNRLEGPLPLWYNLTYLVLGNNLFSGPVPSNIGELSSLRVLVVSGNLLNGTIPSSLTNLKNLRIIDLSNNHLSGKIPNHWNDMEMLGIIDLSKNRLYGEIPSSICSIHVIYFLKLGDNNLSGELSPSLQNCSLYSLDLGNNRFSGEIPKWIGERMSSLKQLRLRGNMLTGNIPEQLCGLSDLRILDLALNNLSGSIPPCLGHLSAMNHVTLLGPSPDYLYTDYYYYREGMELVLKGKEMEFERILSIVKLIDLSRNNLSGVIPHGIANLSTLGTLNLSWNQLTGKVPEDIGAMQGLETLDFSSNRLSGPIPLSMASITSLSHLNLSHNLLSGPIPTTNQFPTFDDPSMYEGNLGLCGLPLSTQCSTPNEDHKDEEDEKEDHDDGWETLWFFTSMGLGFPVGFWAVCGTLALKKSWRHAYFRFVGEAKDRMYVFIAVNVARFQRKMKRNGGAHG* 782
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1409 781 Gene3D Ribonuclease Inhibitor 41 227 IPR032675 -
Vvi1g1409 781 Gene3D Ribonuclease Inhibitor 318 696 IPR032675 -
Vvi1g1409 781 Pfam Leucine rich repeat N-terminal domain 45 80 IPR013210 -
Vvi1g1409 781 SMART LRR_typ_2 118 141 IPR003591 -
Vvi1g1409 781 SMART LRR_typ_2 142 166 IPR003591 -
Vvi1g1409 781 SMART LRR_typ_2 387 411 IPR003591 -
Vvi1g1409 781 SMART LRR_typ_2 483 506 IPR003591 -
Vvi1g1409 781 SMART LRR_typ_2 507 531 IPR003591 -
Vvi1g1409 781 SMART LRR_typ_2 597 621 IPR003591 -
Vvi1g1409 781 SMART LRR_typ_2 363 386 IPR003591 -
Vvi1g1409 781 Gene3D Ribonuclease Inhibitor 228 317 IPR032675 -
Vvi1g1409 781 PANTHER LRR RECEPTOR-LIKE KINASE 389 753 - -
Vvi1g1409 781 SUPERFAMILY RNI-like 326 662 - -
Vvi1g1409 781 PRINTS Leucine-rich repeat signature 121 134 - -
Vvi1g1409 781 PRINTS Leucine-rich repeat signature 387 400 - -
Vvi1g1409 781 Pfam Leucine rich repeat 365 424 IPR001611 GO:0005515
Vvi1g1409 781 Pfam Leucine rich repeat 460 520 IPR001611 GO:0005515
Vvi1g1409 781 Pfam Leucine rich repeat 113 155 IPR001611 GO:0005515
Vvi1g1409 781 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 567 692 - -
Vvi1g1409 781 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 80 339 - -
Vvi1g1409 781 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 340 541 - -
Vvi1g1409 781 SUPERFAMILY L domain-like 41 339 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1409 Vvi-Chr1 20337002 20339347 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1409 109 744 Receptor kinase-like Gene Family AT4G04220 34.540 1.07e-89 298
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1409 - - vvi:100855131 1502.65