Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1406 ATGGCAAGTTGGAAAACCACCCTTCTACTTCTTACTCTTTTTCTCCTTTCTCTGTTTCTCGAGCTTCTCCTAGCTCAAGCTACCATTATCAATTCCATTGATGGTGGTATGAACAAGGGCTGCATTGAGGTAGAGCGGAAAGCGCTTCTTGAATTCAAAAATGGACTGAAAGATCCTTCAGGTAGGCTTTCTTCCTGGGTTGGTGCAGATTGCTGCAAGTGGAAAGGTGTGGATTGCAACAACCAAACAGGGCATGTTGTCAAGGTTGACCTCAAATCTGGTGGTGGCTTCTCACGTTTGGGTGGTGGCTTCTCACGTTTGGGTGGTGAGATAAGTGGTTCCTTACTTGACTTGAAACATTTAACTTACCTGGACCTAAGTCTTAATGATTTTCAAGGAATTCCAATTCCAAATTTCTTGGGCTCATTTGAAAGGTTGAGATACCTTAATCTCTCTAATGCACGATTTGGTGGGATGATTCCTCCTCATCTTGGAAATTTATCACAGTTACGTTATCTTGATCTTTTGGGAGGAGATTATCCAATGAGGGTTTCTAATTTAAATTGGCTTTCTGGTCTTTCTTCTTTAAAATACCTTGATCTGGCGTATGTGGACCTTAGTAAAGCAACCACAAATTGGATGCAAGCTGTAAACATGCTTCCATTTTTGTTAGAATTACATTTGTCCGGTTGTCATCTCAGTCACTTCCCTCAGTACTCCAATCCGTTTGTTAATTTGACTTCTGTTTCGGTCATTGATCTCTCCTACAACAATTTCAACACTACTTTGCCTGGCTGGTTGTTTAATATCAGTACCCTTATGGATCTTTATTTAAATGGTGCTACAATTAAAGGTCCGATTCCCCGTGTTAACTTGGGAAGCCTTCGCAACTTGGTGACCTTAGATCTCTCATTCAATTATATTGGAAGTGAAGCAATTGAATTGGTGAATGGTTTATCAACATGCACTAATAATTCCTTGGAATGGTTAAACTTGGGTTATAATCAATTCGGTGGTCAGTTGCCAGATTCATTAGGGCTCTTTAAGAATTTAAAGTACCTGAACTTGATGAACAATAGTTTTGTTGGTCCCTTCCCCAATTCAATTCAACACCTTACCAACTTAGAGATTCTTTATCTGATTGAAAACTTCATCTCAGGTCCAATTCCAACATGGATTGGAAACTTGCGGCGGATGAAGAGACTTGACTTGTCAAACAATCTAATGAATGGGACTATTCCAAAAAGTATCGGACAACTTAGAGAGCTGACTGAGTTGTATCTTGATTGGAATTCTTGGGAAGGGGTAATATCTGAAATTCATTTTAGTAATCTTACTAAACTGGAAAAATTCTCATTACTCGTATCACCCAAAAACCAGTCTCTCCGTTTTCATTTGAGACCTGAATGGATTCCTCCCTTCAGTCTCGAATCTATCGAGGTTTACAACTTCCATGTATCTCTCAAGTTCCCCAACTGGCTTAGAACTCAAAAGAGACTTGGATTTATGATTCTAAAAAATGTGGGGATTTCAGATGCAATACCCGAATGGCTTTGGAAACAAGATTTTTCGTGGTTAGATCTTTCTAGAAACCAATTGTATGGAACGCTTCCCAACTCATTATCCTTCAGCCAAGGCGCATTGGTGGATTTAAGTTTCAACCACTTGGGGGGCCCACTCCCACTTCGACTTAATGTGGGATCTTTGTATCTGGGAAACAATTCATTTTCTGGTCCAATTCCCTTAAACATCGGGGAATTATCAAGCTTGGAAATCCTTGATGTTTCTTGTAACTTGTTAAATGGCAGCATTCCTTCATCAATTAGTAAACTGAAGTATTTGGGAGTAATTAATCTCTCAAACAATCATTTATCTGGAAAGATTCCAAAGAATTGGAATGATTTGCCATGGCTTGACACTGTAGATCTATCCAAGAACAAAATGTCTGGTGGGATTCCGAGTTGGATGTGTTCAAAATCTTCACTTACTCAGTTGATATTGGGTGACAACAATCTTTCTGGGGAACCCTTTCCAAGCTTACGAAACTACACAGGGTTGTACTCCCTTGATCTTGGAAATAACAGGTTTTCGGGGGAGATACCCAAATGGATTGGAGAAAGAATGCCATCACTGGAGCAGCTGCGTCTACGGGGCAACATGTTGACAGGAGATATTCCTGAGCAATTGTGTTGGCTTTCTCATCTCCACATTTTGGATCTTGCAGTGAACAATTTATCAGGATCCATCCCACAATGCTTAGGCAATTTAACTGCTTTAAGTTTTGTGACCTTATTAGACAGAAATTTTGACGACCCCAATGGTCATGTCGCCTATTCGGAGCGCATGGAGCTAGTTGTAAAGGGACAAAATATGGAATTTGATAGCATATTGCCAATTGTGAATTTGATAGATCTTTCTAGCAATAACATTTGGGGAGAGATCCCAAAAGAGATCACAAATCTCTCGACCCTGGGTACCTTGAATTTGTCCCGAAACCAGTTGACTGGAAAGATACCTGAGAAGATTGGAGCCATGCAAGGGCTAGAAACTCTTGACCTCTCATGCAACTGCCTTTCAGGCCCAATTCCTCCGAGCATGTCTTCTATAACCTCATTGAACCATTTGAACCTATCGCATAACCGCCTGTCAGGACCAATTCCAAAAACCAACCAGTTCTCGACATTCAACGATCCATCCATTTATGAGGCGAACCTCAGACTTTGTGGGCCTCCATTGTCAACCAACTGCTCCACTTTAAATGATCAAGATCACAAAGATGAGGAGGAAGATGAAGATGAATGGGACATGTCATGGTTCTTCATAAGCATGGGATTGGGGTTTCCGGTGGGATTTTGGGTTGTATGTGGCAGTTTGGTTCTAAAGAAGTCTTAG 2892 0.4073 MASWKTTLLLLTLFLLSLFLELLLAQATIINSIDGGMNKGCIEVERKALLEFKNGLKDPSGRLSSWVGADCCKWKGVDCNNQTGHVVKVDLKSGGGFSRLGGGFSRLGGEISGSLLDLKHLTYLDLSLNDFQGIPIPNFLGSFERLRYLNLSNARFGGMIPPHLGNLSQLRYLDLLGGDYPMRVSNLNWLSGLSSLKYLDLAYVDLSKATTNWMQAVNMLPFLLELHLSGCHLSHFPQYSNPFVNLTSVSVIDLSYNNFNTTLPGWLFNISTLMDLYLNGATIKGPIPRVNLGSLRNLVTLDLSFNYIGSEAIELVNGLSTCTNNSLEWLNLGYNQFGGQLPDSLGLFKNLKYLNLMNNSFVGPFPNSIQHLTNLEILYLIENFISGPIPTWIGNLRRMKRLDLSNNLMNGTIPKSIGQLRELTELYLDWNSWEGVISEIHFSNLTKLEKFSLLVSPKNQSLRFHLRPEWIPPFSLESIEVYNFHVSLKFPNWLRTQKRLGFMILKNVGISDAIPEWLWKQDFSWLDLSRNQLYGTLPNSLSFSQGALVDLSFNHLGGPLPLRLNVGSLYLGNNSFSGPIPLNIGELSSLEILDVSCNLLNGSIPSSISKLKYLGVINLSNNHLSGKIPKNWNDLPWLDTVDLSKNKMSGGIPSWMCSKSSLTQLILGDNNLSGEPFPSLRNYTGLYSLDLGNNRFSGEIPKWIGERMPSLEQLRLRGNMLTGDIPEQLCWLSHLHILDLAVNNLSGSIPQCLGNLTALSFVTLLDRNFDDPNGHVAYSERMELVVKGQNMEFDSILPIVNLIDLSSNNIWGEIPKEITNLSTLGTLNLSRNQLTGKIPEKIGAMQGLETLDLSCNCLSGPIPPSMSSITSLNHLNLSHNRLSGPIPKTNQFSTFNDPSIYEANLRLCGPPLSTNCSTLNDQDHKDEEEDEDEWDMSWFFISMGLGFPVGFWVVCGSLVLKKS* 964
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1406 963 Pfam Leucine Rich Repeat 350 372 IPR001611 GO:0005515
Vvi1g1406 963 SUPERFAMILY L domain-like 241 562 - -
Vvi1g1406 963 Gene3D Ribonuclease Inhibitor 388 629 IPR032675 -
Vvi1g1406 963 Gene3D Ribonuclease Inhibitor 315 387 IPR032675 -
Vvi1g1406 963 Gene3D Ribonuclease Inhibitor 219 314 IPR032675 -
Vvi1g1406 963 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 793 916 - -
Vvi1g1406 963 Pfam Leucine Rich repeat 119 132 IPR001611 GO:0005515
Vvi1g1406 963 SMART LRR_typ_2 587 611 IPR003591 -
Vvi1g1406 963 SMART LRR_typ_2 246 270 IPR003591 -
Vvi1g1406 963 SMART LRR_typ_2 396 420 IPR003591 -
Vvi1g1406 963 SMART LRR_typ_2 295 318 IPR003591 -
Vvi1g1406 963 SMART LRR_typ_2 821 845 IPR003591 -
Vvi1g1406 963 SMART LRR_typ_2 708 732 IPR003591 -
Vvi1g1406 963 SMART LRR_typ_2 118 142 IPR003591 -
Vvi1g1406 963 SMART LRR_typ_2 220 243 IPR003591 -
Vvi1g1406 963 Gene3D Ribonuclease Inhibitor 42 218 IPR032675 -
Vvi1g1406 963 SUPERFAMILY L domain-like 565 899 - -
Vvi1g1406 963 PANTHER LRR RECEPTOR-LIKE KINASE 321 400 - -
Vvi1g1406 963 Pfam Leucine rich repeat N-terminal domain 45 80 IPR013210 -
Vvi1g1406 963 Pfam Leucine rich repeat 823 882 IPR001611 GO:0005515
Vvi1g1406 963 Pfam Leucine rich repeat 373 431 IPR001611 GO:0005515
Vvi1g1406 963 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 317 413 - -
Vvi1g1406 963 Gene3D Ribonuclease Inhibitor 630 920 IPR032675 -
Vvi1g1406 963 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 568 792 - -
Vvi1g1406 963 SUPERFAMILY L domain-like 41 316 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1406 Vvi-Chr1 20238969 20241860 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1406 242 916 Receptor kinase-like Gene Family AT4G04220 34.682 1.15e-96 321
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1406 - - vvi:100854888 1880.53