Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1403 ATGGTTGAAGCTCTTACAATCAATTCTAATGACATTGATCTCAACAAAGCTTGCATTGAGGAAGAGCGGAAAGCGCTTCTTGAATTCAAACATGGCCTGTATGATCCTTCAGGTAGGCTTTCTTCCTGGATTGGTTCTGATTGCTGCAAGTGGACAGGTGTGGATTGCAACAATCGGACAGGGAATGTTGTCAAGGTTGACCTCAGAGATCGTGGCTTCTTTCTTTTGGGTGGTGAGATAAGTGGTTCCTTACTTGACTTGAAACATTTAACTTACCTAGACCTAAGTCTTAATGATTTTCAAGGAATTCCAATTCCAAATTTCTTGGGCTCATTTGAAAGGTTCAGATACCTTAATCTCTCTAATGCACGATTTGGTGGGATGATTCCTCCTCATCTTGGAAATTTATCACAGTTACGTTATCTTGATCTTTTTGGAGGAGGAGATTATCCAATGAGGGTTTCTAATTTAAATTGGCTTTCTGGTCTTTCTTCTTTAAAATACCTTGATCTGGGGTATGTGGACCTTAGTAAAACAACCACAAATTGGATGCGAGCTGTAAACATGCTTCCATTTTTGTTAGAATTACATTTGTCCGTTTGTGAACTCAGTCACTTCCCTCAGTACTCCAATACATTTGTTAATTTGACTTCGGTTTTGGTCATTGATCTCTCCTACAACAATTTCAACACTACTTTGCCTGGCTGGTTGTTTAACGTCAGTACCCTTACGGATCTTTATTTAAATGGTGGTACAATTAAAGGTCCGATTCCCCATGTTAACTTGCGATGCCTTCGCAACTTGGTGACCTTAGATCTCTCATACAATAGTATTGGAGGTGAAGGAATTGAATTCCTGAATCGATTATCAGCATGCACTAATAATTCCTTGGAAGAGTTAAACTTGGGCAGTAATCAAGTCAGTGGTCAGTTGCCAGATTCATTAGGGCTCTTTAAGAATTTAAAATCCTTGGACTTGAGCAATAATAGTTTTGTTGGTCCCTTCCCCAATTCAATTCAACACCTTACCAACTTAGAGAGTCTTGATCTGAGTGAAAACTCCATCTCAGGTCCAATTCCAACATGGATTGGAAACTTGCTGCGGATGAAGAGACTTCACTTGTCAAACAATCTAATGAATGGGACTATTCCAAAAAGTATCGGACAACTTAGAGAGCTGACTGAGTTGGGTCTTGATTGGAATTCTTGGGAAGGGGTAATATCTGAAATTCATTTCATTAATCTTACAAAACTGGAATATTTCTCTTTACACTTATCACCCAAAAACCAGTCTCTCCGTTTTCACGTGAGACCTGAATGGATTCCTCCCTTCAGCCTCTTGTCTATCGATATTTCCAACTGCTATGTATTATCTCCCAAGTTCCCCAACTGGCTTAGAACTCAAAAAATACTTAACACAATAGTTCTTAAAAATGTGGGGATTTCAGATACAATACCAGAATGGCTTTGGAAACTAGATTTTTCATGGTTAGATCTTTCTAGAAACCAATTGTATGGAAGGCTTCCCAATTCATTATCCTTTAGCCCAAAAGCATTCCTGGTGGATTTAAGCTTCAACCGCTTGGTGGGCCGATTACCACTTTGGTTTAATGTGACATTGCTCTTTCTCGGAAACAATTCATTTTCAGGTCCAATTCCCTTGAACATCGGGGAATCATCGAGTTTGAGAGTCCTTGATGTTTCTGGTAACTTGTTAAATGGCAGCATTCCTTCATCAATTAGTAAACTAAAGGATTTGGCAGTAATCGATCTCTCAAACAATCATTTATCTGGAAAGATTCCAAAAAATTGGAATGATTTGCAGAGTCTTCAGACCATAGATCTATCCAAGAACAAACTGTCTGGTGGGATTCCGAGTTGGATGTGTTCAAAATCTTCACTTATTCTGTTGATATTGGGTGACAACAATCTTACTGGGGAACTCACTCTAAGTTTACAAAACAGGTTTTCGGGGGAGATACCCAAATGGATTGGAGAAAGAATGCCATCACTGGAGCATCTGCGTCTACGAGGCAACATGTTCACAGGAGATATTCCTGAGCAATTGTGTTGGCTTTCTGATCTCCACATTTTGGATCTTGCACTGAACAATTTATCAGGATTCATCCCACAATGCTTAGGCAATTTAACTGCTTTAAGTTTTGTGACCTTATTAGACAGAAATTTTGACGACCCCAGAATTCATGAATACTATTCGGAGCGCATGGAGCTAGTTGTAAAGGGACAAGATATGGAATTTGATAGATATTGCCAATTGTGA 2280 0.3917 MVEALTINSNDIDLNKACIEEERKALLEFKHGLYDPSGRLSSWIGSDCCKWTGVDCNNRTGNVVKVDLRDRGFFLLGGEISGSLLDLKHLTYLDLSLNDFQGIPIPNFLGSFERFRYLNLSNARFGGMIPPHLGNLSQLRYLDLFGGGDYPMRVSNLNWLSGLSSLKYLDLGYVDLSKTTTNWMRAVNMLPFLLELHLSVCELSHFPQYSNTFVNLTSVLVIDLSYNNFNTTLPGWLFNVSTLTDLYLNGGTIKGPIPHVNLRCLRNLVTLDLSYNSIGGEGIEFLNRLSACTNNSLEELNLGSNQVSGQLPDSLGLFKNLKSLDLSNNSFVGPFPNSIQHLTNLESLDLSENSISGPIPTWIGNLLRMKRLHLSNNLMNGTIPKSIGQLRELTELGLDWNSWEGVISEIHFINLTKLEYFSLHLSPKNQSLRFHVRPEWIPPFSLLSIDISNCYVLSPKFPNWLRTQKILNTIVLKNVGISDTIPEWLWKLDFSWLDLSRNQLYGRLPNSLSFSPKAFLVDLSFNRLVGRLPLWFNVTLLFLGNNSFSGPIPLNIGESSSLRVLDVSGNLLNGSIPSSISKLKDLAVIDLSNNHLSGKIPKNWNDLQSLQTIDLSKNKLSGGIPSWMCSKSSLILLILGDNNLTGELTLSLQNRFSGEIPKWIGERMPSLEHLRLRGNMFTGDIPEQLCWLSDLHILDLALNNLSGFIPQCLGNLTALSFVTLLDRNFDDPRIHEYYSERMELVVKGQDMEFDRYCQL* 760
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1403 759 SMART LRR_typ_2 87 111 IPR003591 -
Vvi1g1403 759 SMART LRR_typ_2 560 583 IPR003591 -
Vvi1g1403 759 SMART LRR_typ_2 265 296 IPR003591 -
Vvi1g1403 759 SMART LRR_typ_2 216 240 IPR003591 -
Vvi1g1403 759 SMART LRR_typ_2 342 366 IPR003591 -
Vvi1g1403 759 SMART LRR_typ_2 190 215 IPR003591 -
Vvi1g1403 759 SMART LRR_typ_2 607 631 IPR003591 -
Vvi1g1403 759 SMART LRR_typ_2 668 692 IPR003591 -
Vvi1g1403 759 SUPERFAMILY L domain-like 154 258 - -
Vvi1g1403 759 Gene3D Ribonuclease Inhibitor 369 602 IPR032675 -
Vvi1g1403 759 Gene3D Ribonuclease Inhibitor 18 291 IPR032675 -
Vvi1g1403 759 Pfam Leucine Rich repeat 293 309 IPR001611 GO:0005515
Vvi1g1403 759 Pfam Leucine Rich repeat 266 285 IPR001611 GO:0005515
Vvi1g1403 759 Pfam Leucine Rich repeat 88 101 IPR001611 GO:0005515
Vvi1g1403 759 Gene3D Ribonuclease Inhibitor 652 751 IPR032675 -
Vvi1g1403 759 Gene3D Ribonuclease Inhibitor 603 651 IPR032675 -
Vvi1g1403 759 Pfam Leucine rich repeat 561 620 IPR001611 GO:0005515
Vvi1g1403 759 Pfam Leucine rich repeat 343 401 IPR001611 GO:0005515
Vvi1g1403 759 Gene3D Ribonuclease Inhibitor 292 368 IPR032675 -
Vvi1g1403 759 SUPERFAMILY L domain-like 17 407 - -
Vvi1g1403 759 Pfam Leucine rich repeat N-terminal domain 20 57 IPR013210 -
Vvi1g1403 759 Pfam Leucine Rich Repeat 320 342 IPR001611 GO:0005515
Vvi1g1403 759 PRINTS Leucine-rich repeat signature 345 358 - -
Vvi1g1403 759 PRINTS Leucine-rich repeat signature 607 620 - -
Vvi1g1403 759 PANTHER LRR RECEPTOR-LIKE KINASE 350 652 - -
Vvi1g1403 759 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 283 539 - -
Vvi1g1403 759 FunFam Leucine-rich repeat receptor protein kinase EMS1 552 651 - -
Vvi1g1403 759 SUPERFAMILY L domain-like 495 730 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1403 Vvi-Chr1 20211798 20214077 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1403 265 742 Receptor kinase-like Gene Family AT5G46330 30.435 3.71e-43 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1403 - - vvi:104880714 1452.19