Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1402 ATGCAAGGGCTAGAAACTCTTGACCTCTCATGCAACCGCCTTTCAGGTCCAATTCCTCCGAGCATGTCTTCTATAACCTCATTGAACCATTTGAACCTATCACATAACCTCCTGTCAGGACCAATTCCAACAACCAACCAATTCTCGACATTCAATGATCCATCCATTTATGAGGCGAACCTGGGACTTTGTGGGCCTCCATTTTCAACCAATTGCTCCACTTTAAATGATCAAGATCACACAGATGAGGAGGAAGATGAAGATGAATGGGACCTGTCATGGTTCTTCATAAGCATGGGATTGGGCTTTCCGGTGGGATTTTGGGCTGTATGTGGCAGTTTGGCTCTAAAGAAGTCTTGGAGGCAGGCTTATTTCCGGTTCATTGATGAAACCAGAGATAGGTTATATGTCTTCACTGCAGTGAATGTGGCTCGTCTGAAAAGGAAGATGGAAACAGATGGAGTTCATGGCTGA 474 0.4494 MQGLETLDLSCNRLSGPIPPSMSSITSLNHLNLSHNLLSGPIPTTNQFSTFNDPSIYEANLGLCGPPFSTNCSTLNDQDHTDEEEDEDEWDLSWFFISMGLGFPVGFWAVCGSLALKKSWRQAYFRFIDETRDRLYVFTAVNVARLKRKMETDGVHG* 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1402 157 Pfam Leucine Rich Repeat 4 22 IPR001611 GO:0005515
Vvi1g1402 157 PRINTS Leucine-rich repeat signature 25 38 - -
Vvi1g1402 157 PRINTS Leucine-rich repeat signature 4 17 - -
Vvi1g1402 157 PANTHER LRR RECEPTOR-LIKE KINASE 1 131 - -
Vvi1g1402 157 SUPERFAMILY L domain-like 3 67 - -
Vvi1g1402 157 Gene3D Ribonuclease Inhibitor 1 81 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1402 Vvi-Chr1 20205024 20205497 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1402 1 135 Miscellaneous Gene Families AT1G74190 35.461 1.03e-18 80.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1402 - - vvi:104880714 308.916