Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1401 ATGGCAAGTTGGAAAACCACCCTTCTACTTCTTACTCTTTTTCTCCTTTCTCTGTTTCTCGAGCTTCTCCTAGCTCAAGCTACTATTATCAATTCCATTGATGGTGGTATGAACAAGGGCTGCATTGAGGTAGAGCGGAAAGCGCTTCTTGAATTCAAACATGGACTGAAAGATCCTTCAGGTAGGCTTTCTTCCTGGGTTGGTGCAGATTGCTGCAAGTGGAAAGGTGTGGATTGCAACAACCAAACAGGGCATGTTGTTAAGGTTGACCTCAAATCTGGTGGTGCCTTCTCACGTTTGGGTGGTGAGATAAGTGATTCCTTACTTGACTTGAAACATTTAAATTACTTGGACCTAAGTTTTAATGATTTTCAAGGAATTCCAATTCCAAATTTCTTGGGCTCATTTGAAAGGTTGAGATACCTTAATCTCTCTCGTGCACAACTTGGTGGGATGATTCCTCCTCATCTTGGAAATTTATCACAGTTACGTTATCTTGATCTTAATGGAGGTTATCCAATGAGGGTTTCTAATTTAAATTGGCTTTCTGGTCTTTCTTCTTTAAAATACCTTGATCTGGGGCATGTGAACCTTAGTAAAGCAACCACAAATTGGATGCAAGCTGTAAACATGCTTCCTTTTTTGTTAGAATTACATTTGTCCCATTGTGAACTCAGTCACTTCCCTCAGTACTCCAATCCGTTTCTTAATTTGACTTCTGTTTCGGTCATTGATCTCTCCCACAACAATTTCAACACTACTTTGCCTGGCTGGTTGTTTGACATCAGTACCCTTATGGATCTTTATTTAACTGACGCTACAATTAAAGGTCCGATTCCCCATGTTAACTTGCTAAGCCTTCACAACTTGGTAACCTTAGATCTCTCGGACAATAATATTGGAAGTGAAGGAATTGAATTGGTGAATGGTTTATCAGCATGCGCTAATAGTTCCTTGGAAGAGTTAAACTTGGGCGGTAATCAAGTCAGTGGTCAGTTGCCAGATTCATTAGGGCTCTTTAAGAATTTAAAATCCCTGTACTTGTGGTATAATAATTTTGTTGGTCCCTTCCCCAATTCAATTCAACACCTTACCAACTTAGAGAGTCTTGATCTGAGTGAAAACTCCATCTCAGGTCCAATTCCAACGTGGATTGGAAATTTGTTGCGGATGAAGACACTTGACTTGTCATTCAATCTAATGAATGGGACTATTCCAAAAAGTATCGGACAACTTAGAGAGCTGACTGTGTTGAATCTTGGTTGGAATGCTTGGGAAGGGGTAATATCTGAAATTCATTTTAGTAATCTTACTAAATTGACAGCATTCTCATTACTCGTATCACCCAAAGACCAGTCTCTCCGTTTTCATTTGAGACTTGAATGGATTCCTCCCTTCAGTCTCGAATATATCGAGGTTTGCAACTGCAATGTATCTCTCAAGTTCCCCAACTGGCTTAGAACTCAAAAGAGACTTCGTGATATGATTCTAAAAAATGTGGGGATTTCAGATGCAATACCCGAATGGCTTTGGAAACTAGATTTTGAATGGTTAGATCTTTCTAGAAACCAATTGTATGGAACGCTTCCCAACTCATTATCCTTTAGCCAATACGAATTGGTGGATTTAAGTTTCAACCGCTTGGGGGCCCCACTCCCACTTCGACTTAATGTGGGATTTTTGTATCTGGGAAACAATTCATTTTCAGGTCCAATTCCCTTGAACATCGGGGAATCATCGAGTTTGGAAGTCCTTGATGTTTCTAGTAACTTGTTAAATGGCAGCATTCCTTCGTCAATTAGTAAACTAAAGGATTTGGAAGTAATTGATCTCTCAAACAATCATTTATCTGGAAAGATTCCAAAGAATTGGAATGATTTGCACAGGCTTTGGACCATAGATCTATCCAAGAACAAACTGTCTAGTGGGATTCCGAGTTGGATGTCTTCAAAATCTTCACTTACTGACTTGATATTGGGTGACAACAATCTTTCTGGGGAACCCTTTCCAAGCTTACGAAACTGCACATGGTTGTACGCCCTTGATCTTGGAAATAACAGGTTTTCGGGTGAGATACCCAAATGGATTGGAGAAAGAATGCCATCACTGGAGCAGCTGCGTCTACGGGGCAACATGTTGACAGGAGATATTCCTGAGCAATTGTGTTGGCTTTCTGATCTCCACATTTTGGATCTTGCAGTGAACAATTTATCAGGATCCATCCCACAATGCTTAGGCAATTTAACTGCTTTAAGTTTTGTGACCTTATTAGACAGAAATTTTGACGACCCCAGTGGTCATGACTTCTATTCAGAGCGCATGGAGCTAGTTGTAAAGGGACAAAATATGGAATTTGATAGCATATTGCCAATTGTGAATTTGATAGATCTTTCTAGCAATAACATTTGGGGAGAGATCCCAAAAGAGATCACAAATCTCTCAACCCTGGGTACCTTGAATTTGTCTCGAAACCAGTTGACTGGAAAGATACCTGAAAAGATTGGAGCCATGCAAGGGCTAGAAACTCTTGACCTCTCATGCAACTGCCTTTCAGGCCCAATTCCTCCGAGCATGTCTTCTATAACCTCATTGAACCATTTGAACCTATCGCATAACCGCCTGTCAGGACCAATTCCAACAACCAACCAGTTCTCGACATTCAACGATCCATCCATTTATGAGGCGAACCTGGGACTTTGTGGGCCTCCATTGTCAACCAACTGCTCCACTCTAAATGATCAAGATCACAAAGATGAGGAGGAAGATGAAGATGAATGGGACATGTCATGGTTCTTCATAAGCATGGGATTGGGCTTTCCGGTGGGATTTTGGGCTGTATGTGGTAGTTTGGTTCTAAAGAAGTCTTGGAGGCAGGCATATTTCCGGTTCATTGATGAAACCAGAGATAGGCTATATGTCTTCACTGCAGTGAATGTGGCTCGTCTGAAAAGGAAGATGGAAGCAAATGGAGTTCATGGCTAA 2982 0.4095 MASWKTTLLLLTLFLLSLFLELLLAQATIINSIDGGMNKGCIEVERKALLEFKHGLKDPSGRLSSWVGADCCKWKGVDCNNQTGHVVKVDLKSGGAFSRLGGEISDSLLDLKHLNYLDLSFNDFQGIPIPNFLGSFERLRYLNLSRAQLGGMIPPHLGNLSQLRYLDLNGGYPMRVSNLNWLSGLSSLKYLDLGHVNLSKATTNWMQAVNMLPFLLELHLSHCELSHFPQYSNPFLNLTSVSVIDLSHNNFNTTLPGWLFDISTLMDLYLTDATIKGPIPHVNLLSLHNLVTLDLSDNNIGSEGIELVNGLSACANSSLEELNLGGNQVSGQLPDSLGLFKNLKSLYLWYNNFVGPFPNSIQHLTNLESLDLSENSISGPIPTWIGNLLRMKTLDLSFNLMNGTIPKSIGQLRELTVLNLGWNAWEGVISEIHFSNLTKLTAFSLLVSPKDQSLRFHLRLEWIPPFSLEYIEVCNCNVSLKFPNWLRTQKRLRDMILKNVGISDAIPEWLWKLDFEWLDLSRNQLYGTLPNSLSFSQYELVDLSFNRLGAPLPLRLNVGFLYLGNNSFSGPIPLNIGESSSLEVLDVSSNLLNGSIPSSISKLKDLEVIDLSNNHLSGKIPKNWNDLHRLWTIDLSKNKLSSGIPSWMSSKSSLTDLILGDNNLSGEPFPSLRNCTWLYALDLGNNRFSGEIPKWIGERMPSLEQLRLRGNMLTGDIPEQLCWLSDLHILDLAVNNLSGSIPQCLGNLTALSFVTLLDRNFDDPSGHDFYSERMELVVKGQNMEFDSILPIVNLIDLSSNNIWGEIPKEITNLSTLGTLNLSRNQLTGKIPEKIGAMQGLETLDLSCNCLSGPIPPSMSSITSLNHLNLSHNRLSGPIPTTNQFSTFNDPSIYEANLGLCGPPLSTNCSTLNDQDHKDEEEDEDEWDMSWFFISMGLGFPVGFWAVCGSLVLKKSWRQAYFRFIDETRDRLYVFTAVNVARLKRKMEANGVHG* 994
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1401 993 Gene3D Ribonuclease Inhibitor 42 310 IPR032675 -
Vvi1g1401 993 Pfam Leucine rich repeat 342 400 IPR001611 GO:0005515
Vvi1g1401 993 Pfam Leucine rich repeat 815 874 IPR001611 GO:0005515
Vvi1g1401 993 Pfam Leucine rich repeat 113 170 IPR001611 GO:0005515
Vvi1g1401 993 Pfam Leucine rich repeat 581 640 IPR001611 GO:0005515
Vvi1g1401 993 Pfam Leucine Rich repeat 316 331 IPR001611 GO:0005515
Vvi1g1401 993 Pfam Leucine Rich repeat 287 306 IPR001611 GO:0005515
Vvi1g1401 993 SMART LRR_typ_2 287 314 IPR003591 -
Vvi1g1401 993 SMART LRR_typ_2 136 160 IPR003591 -
Vvi1g1401 993 SMART LRR_typ_2 627 651 IPR003591 -
Vvi1g1401 993 SMART LRR_typ_2 111 135 IPR003591 -
Vvi1g1401 993 SMART LRR_typ_2 212 235 IPR003591 -
Vvi1g1401 993 SMART LRR_typ_2 603 626 IPR003591 -
Vvi1g1401 993 SMART LRR_typ_2 700 724 IPR003591 -
Vvi1g1401 993 SMART LRR_typ_2 238 262 IPR003591 -
Vvi1g1401 993 SMART LRR_typ_2 813 837 IPR003591 -
Vvi1g1401 993 SMART LRR_typ_2 364 388 IPR003591 -
Vvi1g1401 993 PANTHER LRR RECEPTOR-LIKE KINASE 651 967 - -
Vvi1g1401 993 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 554 642 - -
Vvi1g1401 993 SMART LRR_sd22_2 837 866 - -
Vvi1g1401 993 SMART LRR_sd22_2 579 608 - -
Vvi1g1401 993 SMART LRR_sd22_2 364 390 - -
Vvi1g1401 993 SMART LRR_sd22_2 627 646 - -
Vvi1g1401 993 SMART LRR_sd22_2 287 307 - -
Vvi1g1401 993 SMART LRR_sd22_2 724 750 - -
Vvi1g1401 993 Gene3D Ribonuclease Inhibitor 452 912 IPR032675 -
Vvi1g1401 993 SUPERFAMILY L domain-like 41 307 - -
Vvi1g1401 993 FunFam Leucine-rich repeat receptor-like kinase 44 156 - -
Vvi1g1401 993 SUPERFAMILY L domain-like 232 554 - -
Vvi1g1401 993 SUPERFAMILY L domain-like 558 892 - -
Vvi1g1401 993 PRINTS Leucine-rich repeat signature 367 380 - -
Vvi1g1401 993 PRINTS Leucine-rich repeat signature 603 616 - -
Vvi1g1401 993 Gene3D Ribonuclease Inhibitor 311 446 IPR032675 -
Vvi1g1401 993 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 229 446 - -
Vvi1g1401 993 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 643 912 - -
Vvi1g1401 993 Pfam Leucine rich repeat N-terminal domain 45 80 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1401 Vvi-Chr1 20159130 20162111 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1401 234 908 Receptor kinase-like Gene Family AT4G04220 35.405 1.31e-101 335
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1401 - - vvi:100251213 1950.64