Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1397 ATGGTAGATTTGCAGGCATCGTTTTGTCTCCCTTCTTCTCCTTATGATTCTTGCAATGACCAAAGAACCAGTTCGCATCCTCATTACTGGAGCCGCGAGACAAATTGGCCTGTGATCCTGCACATGCTTAATATCCCTCCTACTGAAGAAGCCTTAAATGGGGTCAAAATGGAATTGTTGGATAGTGCTTTTCCACTTCTCAAAGGTGTTGTTACTACAACTGATTGGGGTCAATATTGCTATCATGGTGGTGGTTTCCTAAGAAAAGAAGGAATGGAAAGAAAAAGTGTGATGTCCAAAAATGTTTCCACCTACCAGTCTCAGGCCTCTGCACTTGAAAATCATGCAGCTGCAAATTGCAAGGTTTTGGTTGTTGCTAACCCAGCAAATGCAATCGCCTTTATCCTGAAGGGATTTGCACCTTTAATATCCTGA 435 0.4253 MVDLQASFCLPSSPYDSCNDQRTSSHPHYWSRETNWPVILHMLNIPPTEEALNGVKMELLDSAFPLLKGVVTTTDWGQYCYHGGGFLRKEGMERKSVMSKNVSTYQSQASALENHAAANCKVLVVANPANAIAFILKGFAPLIS* 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1397 144 Pfam lactate/malate dehydrogenase, NAD binding domain 40 141 IPR001236 GO:0016491
Vvi1g1397 144 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 35 139 IPR036291 -
Vvi1g1397 144 PANTHER MALATE DEHYDROGENASE 36 143 IPR010945 GO:0006108|GO:0016615
Vvi1g1397 144 Gene3D - 31 144 - -
Vvi1g1397 144 FunFam Malate dehydrogenase 32 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1397 Vvi-Chr1 20143700 20144204 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1397 K00025 - dct:110113907 157.147