Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1396 ATGAAGGAGACTTTTTTCTCTCCATTTGAGAGATACATAGTATCTGATTGTTATGGTCTTGAGGTGATTGTGGACAATCAAAACTACCTTAATGAGTCAAAGGTGGATGCTGTTGCAAAAACCCTACAAGCAGGGTTGGATTTGGAATGTGGCCATTACTATACTGATGCCCTTAACGAATCAGTCCTGACTGGGAAAGTGAGTCAGTATGAACTAGACCGGGCATTGAAGAATATTTATGTTCTGCTTATGAGGGTTGGATACTTTGATGGTATCCCGGCGTATGAGTCGCTTGGACTGAAGGATATCTGTGCTGCAGATCACATTGAGTTGGCAAGGGAAGCCGCAAGACAAGGGATCGTTCTTCTGAAGAATGATTATGAAGTTTTGCCATTAAAACCTGGAAAAAAGTTAGTATTGGTTGGGCCCCATGCCAATGCTACTGAAGTTATGATTGGAAACTATGCAGGTCTGCCCTACAAGTATGTATCTCCTCTTGAAGCCTTTTCTGCCATTGGAAACGTCACATATGCGACGGGCTGTTTGGATGCTTCATGCAGTAACGATACCTATTTCTCTGAAGCAAAAGAAGCTGCAAAATTTGCAGAAGTTACCATCATTTTCGTAGGAACTGACTTATCGATCGAGGCTGAGTTCGTAGATAGAGTTGATTTCCTACTCCCAGGCAACCAAACAGAGCTGATCAAACAAGTTGCTGAAGTCTCCAGTGGTCCTGTGATTCTTGTAGTCCTCAGTGGTAGCAATATTGACATCACTTTTGCTAAAAATAATCCCAGAATCTCAGCCATCCTCTGGGTTGGTTTTCCTGGGGAGCAAGGCGGACACGCCATTGCAGATGTTGTTTTTGGGAAGTATAATCCTGCTAAAAGACAATGA 897 0.4292 MKETFFSPFERYIVSDCYGLEVIVDNQNYLNESKVDAVAKTLQAGLDLECGHYYTDALNESVLTGKVSQYELDRALKNIYVLLMRVGYFDGIPAYESLGLKDICAADHIELAREAARQGIVLLKNDYEVLPLKPGKKLVLVGPHANATEVMIGNYAGLPYKYVSPLEAFSAIGNVTYATGCLDASCSNDTYFSEAKEAAKFAEVTIIFVGTDLSIEAEFVDRVDFLLPGNQTELIKQVAEVSSGPVILVVLSGSNIDITFAKNNPRISAILWVGFPGEQGGHAIADVVFGKYNPAKRQ* 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1396 298 SUPERFAMILY Beta-D-glucan exohydrolase, C-terminal domain 120 295 IPR036881 GO:0004553|GO:0005975
Vvi1g1396 298 PANTHER SUGAR HYDROLASE-RELATED 9 297 IPR044993 GO:0009044|GO:0045493
Vvi1g1396 298 Gene3D - 106 297 IPR036881 GO:0004553|GO:0005975
Vvi1g1396 298 Gene3D - 7 97 IPR036962 GO:0004553|GO:0005975
Vvi1g1396 298 Pfam Glycosyl hydrolase family 3 C-terminal domain 120 295 IPR002772 GO:0004553|GO:0005975
Vvi1g1396 298 SUPERFAMILY (Trans)glycosidases 9 119 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1396 Vvi-Chr1 20119054 20121611 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1396 12 297 Glycoside Hydrolase AT5G64570 48.797 4.69e-90 278
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1396 K15920 - vvi:100259724 537.724