Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1395 ATGAAGAAAGAGAAGGATAAAATTATGGTCAGAAATACAATACCAGAATGGCTTTGGAAACTAGATTTTTCATGGTTAGATCTTTCTAAAAACCAATTGTATGGAAAGCTTCCCAACTCATTATCCTTTAGCCCAGGAGCAGTCGTGGTGGATTTAAGCTTCAACCGCTTGGTGGGCCGATTCCCACTTTGGTTTAATGTGATAGAGCTCTTTCTGGGAAACAATTTATTTTCTGGTCCAATTCCCTTGAACATCGGGGAATTATCGAGTTTGGAAATCCTTGATATTTCTGGTAACTTGTTAAATGGCAGCATCCCTTCATCAATTAGTAAACTAAAGGATTTGAACGAAATTGATCTCTCAAACAATCATTTATCTGGAAAGATTCCAAAGAATTGGAATGATTTGCACCATCTTGACACCATAGATCTATCTAAGAACAAACTGTCAGGTGGGATTCCAAGTTCGATGTGTTCAATATCTTTATTTAACTTGATATTGGGCGACAACAATCTTTCTGGGAAACTCTCTCAAAGCTTACAAAACTACACAGAGCTGCACTCCCTTGATCTTGGAAATAACAGGTTTTCGGGCGAGATACCCAAATGGATTGGAGAAAAAATGTCATCATTGAGGCAACTTCGTTTACGAGGCAACATGTTGACAGGAGATATTCCTGAACAACTGTGTGGGCTTTCTTATCTCCACATTTTGGATCTTGCGCTTAACAATTTATCAGGATCCATCCCACAATGCTTAGGCAATTTGACTGCTTTACATTCTGTGACCTTATTAAACATAGAATCTGATGACAACATCGGGGGGCGTGGCTCTTATTCAGGGCGCATGGAGCTAGTTGTGAAGGGACAATATATGGAATTTGATAGCATACTGCCAATTGTGAATTTGATTGATCTTTCTAGCAATAACATTTGGGGAGAGATCCCAGAAGAGATCACAAATCTCCCGACCCTGGGTACCTTGAATTTGTCCCAAAACCAATTGATTGGAAAGATACCTGAGAGGATCGGAGCTATGCAAGGGCTAGAAACTCTTGACCTCTCATGCAACCGCCTTTCAGGCTCAATTCCTCCGAGCATGTCTTCTCTAACCTTATTGAACCATTTGAACCTATCGCATAACCTCCTATCAGGACCAATTCCAACAACCAACCAGTTCTGGACATTCAACGATCCGTCCATTTATGAGGCGAACCTGGGACTTTGTGGGCCTCCATTGTCAACCAACTGCTCCACTTTAAATGATCAAGATCACAAAGATGAGGAGAAAGATGAAGATGAAGATGAATGGGACCTGTCATGGTTCTTCATAAGCATGGGATTGGGCTTTCCGGTGGGATTTTGGGTTGTATGTGGCAGTTTGGCTCTAAAGCAGTCTTGGAGGCAGGCTTATTTCCGGTTCATTGATGAAACCAGAGATAGGCTATATGTCTTCACTGCAGTGAATGTGGCTCGTCTGAAAAGGAAGATGGAAACAGATGGAGTTCATGGCTGA 1515 0.4152 MKKEKDKIMVRNTIPEWLWKLDFSWLDLSKNQLYGKLPNSLSFSPGAVVVDLSFNRLVGRFPLWFNVIELFLGNNLFSGPIPLNIGELSSLEILDISGNLLNGSIPSSISKLKDLNEIDLSNNHLSGKIPKNWNDLHHLDTIDLSKNKLSGGIPSSMCSISLFNLILGDNNLSGKLSQSLQNYTELHSLDLGNNRFSGEIPKWIGEKMSSLRQLRLRGNMLTGDIPEQLCGLSYLHILDLALNNLSGSIPQCLGNLTALHSVTLLNIESDDNIGGRGSYSGRMELVVKGQYMEFDSILPIVNLIDLSSNNIWGEIPEEITNLPTLGTLNLSQNQLIGKIPERIGAMQGLETLDLSCNRLSGSIPPSMSSLTLLNHLNLSHNLLSGPIPTTNQFWTFNDPSIYEANLGLCGPPLSTNCSTLNDQDHKDEEKDEDEDEWDLSWFFISMGLGFPVGFWVVCGSLALKQSWRQAYFRFIDETRDRLYVFTAVNVARLKRKMETDGVHG* 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1395 504 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 65 276 - -
Vvi1g1395 504 Gene3D Ribonuclease Inhibitor 7 66 IPR032675 -
Vvi1g1395 504 PRINTS Leucine-rich repeat signature 115 128 - -
Vvi1g1395 504 PRINTS Leucine-rich repeat signature 322 335 - -
Vvi1g1395 504 PANTHER LRR RECEPTOR-LIKE KINASE 70 156 - -
Vvi1g1395 504 SUPERFAMILY L domain-like 64 401 - -
Vvi1g1395 504 ProSiteProfiles Leucine-rich repeat profile. 348 370 IPR001611 GO:0005515
Vvi1g1395 504 Gene3D Ribonuclease Inhibitor 67 157 IPR032675 -
Vvi1g1395 504 Pfam Leucine rich repeat 346 383 IPR001611 GO:0005515
Vvi1g1395 504 Pfam Leucine rich repeat 90 149 IPR001611 GO:0005515
Vvi1g1395 504 Gene3D Ribonuclease Inhibitor 158 426 IPR032675 -
Vvi1g1395 504 SMART LRR_typ_2 136 160 IPR003591 -
Vvi1g1395 504 SMART LRR_typ_2 208 232 IPR003591 -
Vvi1g1395 504 SMART LRR_typ_2 346 370 IPR003591 -
Vvi1g1395 504 SMART LRR_typ_2 88 112 IPR003591 -
Vvi1g1395 504 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 294 417 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1395 Vvi-Chr1 20112086 20113739 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1395 25 476 Miscellaneous Gene Families AT1G74190 36.217 5.20e-72 244
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1395 - - vvi:100252734 964.14