Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1394 ATGGCGACCAGGAAAACCTTCATCCCATTTCTTGTCCTTCTTTTGCTTCCTTTATTTCTCGAATTTTTCTTACTTGAAGCCCTTGTGATCAATTCCACTGATGGTGATAGGGACGTGGTTTGCATTGAGATGGAGCGGAAAGCCCTTCTTAAATTCAAAGGTGGTCTGGAAGATCCTTCAGGTCGGCTTTCTTCTTGGGTTGGTGGAGATTGTTGCAAATGGCGAGGCGTGGATTGCAATAATGAGACAGGACATGTTATAAAGCTAGACCTCAAAAACCCTTATCAATCCGATGAAGCAGCATTTCCCTTGCGTTTAATTGGCCAGATAAGTGATTCCTTGCTTGACTTGAAATATTTGAATTACCTGGATTTGTCTAACAATGAATTGAGCGGCCTGATCCCTGATTCAATAGGAAACCTTGACCACTTAAGATATCTTGATCTTAGGGACAACTCAATCTCGGGTTCAATTCCAGCATCCATTGGAAGGCTGTTGTTGTTGGAGGAATTGGACCTCTCTCACAACGGAATGAATGGGACCATCCCAGAAAGTATAGGACAACTGAAAGAGCTCCTTAGCTTAACACTTGATTGGAATCCTTGGAAGGGGAGGGTATCCGAAATTCACTTCATGGGTCTTATAAAACTGGAATATTTCTCCTCATACTTATCACCGGCTACAAACAACTCTCTGGTTTTCGATATTACAAGTGACTGGATTCCTCCTTTCAGTCTCAAGGTTATCAGAATCGGCAACTGCATACTGTCTCAAACATTCCCTTCCTGGCTCGGAACTCAGAAGGAACTTTACCGAATAATCCTCCGTAATGTTGGGATTTCAGACACTATACCAGAATGGCTTTGGAAGTTGTCTCGACAGCTTGGGTGGTTAGATCTTTCCAGGAACCAATTGAGGGGAAAACCTCCCAGTCCCTTATCCTTCAACACATCGCATGGATGGAGTATGGCAGATTTAAGTTTCAACCGCTTAGAGGGTCCACTCCCACTTTGGTATAATTTGACGTATCTTGTTTTGGGGAACAATTTATTTTCAGGTCCAGTTCCCTCCAATATTGGGGAATTATCAAGTTTGAGAGTCCTGGTTGTTTCGGGGAACTTGTTGAATGGGACCATCCCATCATCATTAACTAACCTGAAGAATTTGAGGATTATTGATCTCTCAAATAACCATTTATCTGGAAAGATTCCCAATCATTGGAATGATATGGAAATGCTTGGCATCATTGATCTATCCAAGAACAGACTGTATGGCGAGATTCCAAGTTCCATATGTTCAATCCATGTAATTTACTTTTTGAAACTGGGCGACAACAATCTTTCTGGGGAACTCTCTCCAAGCTTACAAAACTGCAGTCTGTACTCCCTTGATCTTGGAAATAACAGGTTTTCAGGTGAGATACCCAAATGGATCGGAGAAAGAATGTCATCACTGAAGCAGCTACGCCTACGAGGCAACATGCTGACCGGAAATATTCCTGAACAACTATGTGGGCTTTCTGATCTCCGCATTTTGGACCTTGCACTTAATAATCTATCAGGATCCATCCCTCCATGCTTAGGCCATTTGAGTGCTATGAATCATGTGACCTTATTAGGTCCTTCTCCAGATTACCTATATACTGATTATTATTACTACAGGGAGGGAATGGAGCTAGTTGTGAAGGGAAAAGAAATGGAATTTGAGAGGATACTTTCAATTGTGAAGTTGATAGACCTTTCTAGGAATAACTTATCGGGAGTGATTCCACATGGGATTGCAAATCTCTCAACCTTGGGTACCTTGAATTTGTCCTGGAACCAATTGACTGGAAAGATACCCGAGGACATTGGAGCCATGCAAGGGTTAGAAACTCTGGACTTCTCGAGCAACCGCCTTTCAGGCCCAATTCCTCTGAGCATGGCTTCTATAACCTCATTGAGCCATTTGAACTTGTCGCATAACCTCCTGTCAGGACCCATTCCAACAACCAACCAGTTCCCTACATTCGATGATCCATCCATGTATGAGGGTAACCTGGGACTTTGTGGGCTTCCATTGTCAACCCAGTGCTCCACTCCTAATGAAGATCACAAAGATGAGAAGGAAGATCATGACGATGGGTGGGAAACATTATGGTTCTTCACAAGCATGGGACTGGGCTTCCCGGTGGGATTTTGGGCTGTATGTGGCACTTTGGCTCTAAAAAAGTCTTGGAGGCATGCTTATTTTCGGTTTGTTGGTGAAGCGAAAGATAGGATGTATGTCTTTATTGCAGTGAATGTGGCTCGTTTCCAAAGGAAGATGAAAAGAAATGGTGGAGCTCATGGTTGA 2334 0.4306 MATRKTFIPFLVLLLLPLFLEFFLLEALVINSTDGDRDVVCIEMERKALLKFKGGLEDPSGRLSSWVGGDCCKWRGVDCNNETGHVIKLDLKNPYQSDEAAFPLRLIGQISDSLLDLKYLNYLDLSNNELSGLIPDSIGNLDHLRYLDLRDNSISGSIPASIGRLLLLEELDLSHNGMNGTIPESIGQLKELLSLTLDWNPWKGRVSEIHFMGLIKLEYFSSYLSPATNNSLVFDITSDWIPPFSLKVIRIGNCILSQTFPSWLGTQKELYRIILRNVGISDTIPEWLWKLSRQLGWLDLSRNQLRGKPPSPLSFNTSHGWSMADLSFNRLEGPLPLWYNLTYLVLGNNLFSGPVPSNIGELSSLRVLVVSGNLLNGTIPSSLTNLKNLRIIDLSNNHLSGKIPNHWNDMEMLGIIDLSKNRLYGEIPSSICSIHVIYFLKLGDNNLSGELSPSLQNCSLYSLDLGNNRFSGEIPKWIGERMSSLKQLRLRGNMLTGNIPEQLCGLSDLRILDLALNNLSGSIPPCLGHLSAMNHVTLLGPSPDYLYTDYYYYREGMELVVKGKEMEFERILSIVKLIDLSRNNLSGVIPHGIANLSTLGTLNLSWNQLTGKIPEDIGAMQGLETLDFSSNRLSGPIPLSMASITSLSHLNLSHNLLSGPIPTTNQFPTFDDPSMYEGNLGLCGLPLSTQCSTPNEDHKDEKEDHDDGWETLWFFTSMGLGFPVGFWAVCGTLALKKSWRHAYFRFVGEAKDRMYVFIAVNVARFQRKMKRNGGAHG* 778
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1394 777 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 102 338 - -
Vvi1g1394 777 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 566 691 - -
Vvi1g1394 777 Gene3D Ribonuclease Inhibitor 317 695 IPR032675 -
Vvi1g1394 777 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 339 539 - -
Vvi1g1394 777 SUPERFAMILY L domain-like 41 337 - -
Vvi1g1394 777 SMART LRR_typ_2 386 410 IPR003591 -
Vvi1g1394 777 SMART LRR_typ_2 596 620 IPR003591 -
Vvi1g1394 777 SMART LRR_typ_2 482 505 IPR003591 -
Vvi1g1394 777 SMART LRR_typ_2 141 165 IPR003591 -
Vvi1g1394 777 SMART LRR_typ_2 506 530 IPR003591 -
Vvi1g1394 777 SMART LRR_typ_2 362 385 IPR003591 -
Vvi1g1394 777 SMART LRR_typ_2 117 140 IPR003591 -
Vvi1g1394 777 Gene3D Ribonuclease Inhibitor 41 224 IPR032675 -
Vvi1g1394 777 Gene3D Ribonuclease Inhibitor 228 316 IPR032675 -
Vvi1g1394 777 Pfam Leucine rich repeat 459 519 IPR001611 GO:0005515
Vvi1g1394 777 Pfam Leucine rich repeat 364 423 IPR001611 GO:0005515
Vvi1g1394 777 Pfam Leucine rich repeat 113 154 IPR001611 GO:0005515
Vvi1g1394 777 PANTHER LRR RECEPTOR-LIKE KINASE 437 749 - -
Vvi1g1394 777 SUPERFAMILY RNI-like 325 660 - -
Vvi1g1394 777 Pfam Leucine rich repeat N-terminal domain 44 80 IPR013210 -
Vvi1g1394 777 PRINTS Leucine-rich repeat signature 120 133 - -
Vvi1g1394 777 PRINTS Leucine-rich repeat signature 386 399 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1394 Vvi-Chr1 20103803 20106136 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1394 108 740 Receptor kinase-like Gene Family AT4G04220 34.592 6.77e-89 296
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1394 - - vvi:100242491 1499.57