Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1392 ATGCAAGCTGTGAACACGATTCCTTCTCTGGTTGAATTGTCTTTGCTTGGATGTCAACTTAGTACATTTCCTCAGTCTCTCCCATTTGTTAATCTGACTTCTCTGTCGGTCCTTGACCTTAGTCACAACCATTTCAGACTTTCAGTACTATCATACCTAGCTGGTTGTTTAATCTCAGTAACCTCGCTATCCTTCAGCTTAGAATTACTTTTGAGGCTAAATCGCTTTCGTGGCAAGTTTCCCGAATCATTAGGCCATTTTAAGAATTTAATATCGATAGATTTGTCTGATAATGAATTGAGTGGCCAGTTACCTGATTCTTTAGGAAACCTTGAGAGGTTAAGATCTCTTGATCTTAGTAGCAACTTAATCTCGGGTTCACTTCCACCACCTATTGGACGGTTGTCTTTGTTGGAGAAATTGATTCTCTTTAACAATACAATGAATGGGACCATCCCAGAAAGTATAGGCCAACTTGAAGGGTTCAGCTCATCAGTATGCAGTATGGTGGATTTAAGTTCCAACCGCTTCGATTGTGGAATCCCACTTTGGTATAATCTGGCATATCTCTTTTTGAGAAACTACTTATTATCAGGTCCAATTCCCTTGAATATTGGGGAATTATCAAGCTTGAAAGTGCTAGCTGTTTCTGGTAACTTGTTAAATGGAAGCATCCCATCATCAATAAGTAAACTAAAGAATTTGGAGATTGTTGATCTCTCGGACAATCATTTATCTGGAAAAATTCCAATGCACTGGAATGATTTGCAACTACTAGAGGTCATAGATCTATCCATGAACAAATTGTCTGGCGGGATTCCGAGTTTGATATGTTCAATGCCTTCACTTTTCAGGTTGGAATTGTTTTTGGGGCAAAATCAATTCAATGGCCATTTTCCTGATTCCTTTGGATATCTTAAGAATTTAAGATTGATAGATGTGTTTGATAATCGATTAAGTGGCCAGATTCCCAATTCATTAGGACATCTTAAAAATATAAGATCGATAAATTTGTCGAAAAATGAATTGAGTGGACCGATTCCTGATTCAATAGGAAACCTTGGCAACTTAAGATCTCTTCTTCTTAGTGACAATGCAATCTCGGGTTCAATTCCACCATCCATTGGAAAGCTGTTGTTCTTGGAGGAATTGGACCTCTCTCACAACGGAATGAATGGGACCATCCCAGAAAGTATAGGACAACTTAAAGAGCTCCTTGCCTTAACACTTGATTGGAATTCTTGGAAAGGGACGCCTCCCAGCCCACTATCCTTCAGCACATCGCAGGGATGGAGTATGGCAGATTTAAGTTTCAACCGCTTAGAGGGTCCACTCCCACTTTGGTATAATTTGACATATCTCTTTTGCGAAACAATCTATTTTCAGGTCCAATTCCCTCCGATATTGGCGGGGAATTATCAAGTTTGA 1428 0.3936 MQAVNTIPSLVELSLLGCQLSTFPQSLPFVNLTSLSVLDLSHNHFRLSVLSYLAGCLISVTSLSFSLELLLRLNRFRGKFPESLGHFKNLISIDLSDNELSGQLPDSLGNLERLRSLDLSSNLISGSLPPPIGRLSLLEKLILFNNTMNGTIPESIGQLEGFSSSVCSMVDLSSNRFDCGIPLWYNLAYLFLRNYLLSGPIPLNIGELSSLKVLAVSGNLLNGSIPSSISKLKNLEIVDLSDNHLSGKIPMHWNDLQLLEVIDLSMNKLSGGIPSLICSMPSLFRLELFLGQNQFNGHFPDSFGYLKNLRLIDVFDNRLSGQIPNSLGHLKNIRSINLSKNELSGPIPDSIGNLGNLRSLLLSDNAISGSIPPSIGKLLFLEELDLSHNGMNGTIPESIGQLKELLALTLDWNSWKGTPPSPLSFSTSQGWSMADLSFNRLEGPLPLWYNLTYLFCETIYFQVQFPPILAGNYQV* 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1392 475 Gene3D Ribonuclease Inhibitor 1 274 IPR032675 -
Vvi1g1392 475 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 184 455 - -
Vvi1g1392 475 SUPERFAMILY RNI-like 12 426 - -
Vvi1g1392 475 Gene3D Ribonuclease Inhibitor 275 470 IPR032675 -
Vvi1g1392 475 PRINTS Leucine-rich repeat signature 232 245 - -
Vvi1g1392 475 PRINTS Leucine-rich repeat signature 90 103 - -
Vvi1g1392 475 FunFam Leucine-rich repeat receptor protein kinase EMS1 59 155 - -
Vvi1g1392 475 SMART LRR_typ_2 378 402 IPR003591 -
Vvi1g1392 475 SMART LRR_typ_2 306 330 IPR003591 -
Vvi1g1392 475 SMART LRR_typ_2 208 232 IPR003591 -
Vvi1g1392 475 SMART LRR_typ_2 111 135 IPR003591 -
Vvi1g1392 475 SMART LRR_typ_2 32 57 IPR003591 -
Vvi1g1392 475 SMART LRR_typ_2 354 377 IPR003591 -
Vvi1g1392 475 SMART LRR_typ_2 256 280 IPR003591 -
Vvi1g1392 475 PANTHER UNNAMED PRODUCT 7 349 - -
Vvi1g1392 475 Pfam Leucine rich repeat 68 124 IPR001611 GO:0005515
Vvi1g1392 475 Pfam Leucine Rich Repeat 332 354 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1392 Vvi-Chr1 20085777 20097440 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1392 182 448 Receptor kinase-like Gene Family AT3G56370 35.052 3.17e-34 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1392 - K13468 vvi:100259600 314.694