Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1386 ATGATTGACTGCAGCATATATGAACGCATATTCAAGCGCTTTGATGAAGATGGAGATGGGAAACTCTCTCCTTCGGAGCTTCGACGCTGTTTTGTGGGGTGGATGGAAAGAGAGGGTGAAGAGAGAAAGATGGAGGAGTTGAGAGAGGCCTTTAGGATGTATGAGATGGAAGGGAGTGGGTGTATTACTGCAAAGAGCTTGAAGAGGATGCTGAGTAGATTGGGGGAGTCAAGAAGTGTGGAAGAATGCGGTGTTATGATCGGACAGTTTGATGTAAACGGGGATGGGGTTCTGAGCTTTGATGAGTTCAAGCTCATGATGCTTTAA 327 0.4618 MIDCSIYERIFKRFDEDGDGKLSPSELRRCFVGWMEREGEERKMEELREAFRMYEMEGSGCITAKSLKRMLSRLGESRSVEECGVMIGQFDVNGDGVLSFDEFKLMML* 109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1386 108 ProSiteProfiles EF-hand calcium-binding domain profile. 78 108 IPR002048 GO:0005509
Vvi1g1386 108 ProSiteProfiles EF-hand calcium-binding domain profile. 42 77 IPR002048 GO:0005509
Vvi1g1386 108 SMART efh_1 46 74 IPR002048 GO:0005509
Vvi1g1386 108 SMART efh_1 6 34 IPR002048 GO:0005509
Vvi1g1386 108 SMART efh_1 82 108 IPR002048 GO:0005509
Vvi1g1386 108 CDD EFh 46 107 IPR002048 GO:0005509
Vvi1g1386 108 Coils Coil 37 57 - -
Vvi1g1386 108 Gene3D - 34 108 - -
Vvi1g1386 108 ProSiteProfiles EF-hand calcium-binding domain profile. 2 37 IPR002048 GO:0005509
Vvi1g1386 108 FunFam Calcium-binding protein CML38 38 108 - -
Vvi1g1386 108 Gene3D - 7 33 - -
Vvi1g1386 108 SUPERFAMILY EF-hand 6 107 IPR011992 -
Vvi1g1386 108 ProSitePatterns EF-hand calcium-binding domain. 91 103 IPR018247 -
Vvi1g1386 108 Pfam EF-hand domain pair 45 107 IPR002048 GO:0005509
Vvi1g1386 108 Pfam EF hand 10 31 IPR002048 GO:0005509
Vvi1g1386 108 CDD EFh 7 72 IPR002048 GO:0005509
Vvi1g1386 108 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 46 107 - -
Vvi1g1386 108 ProSitePatterns EF-hand calcium-binding domain. 15 27 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1386 Vvi-Chr1 20034283 20034705 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1386 8 107 EF-hand Containing Proteins AT1G76650 40.909 2.37e-26 94.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1386 K13448 - vvi:100247735 182.57