Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1383 ATGATTAACTGCAGCATATATGAACGCATATTCAAGCGCTTTGATGAAGATGGAGATGGGAAACTCTCTCCTTCGGAGCTTCGACGCTGTGTGGAGACGATAGGGGGAGGAGCTGCTGATGGAGGAGGCGCAGGAGGTGGTGGAGTCGATGGACTCAGACGGGGATGGGTTGGTGGGGTTGGAGGAATTTGTGGGGTGGATGGAGAGAGAGGGCGAAGAGAGAAAGATGGAGGAGTTGAGAGAGGCTTTTAG 252 0.5317 MINCSIYERIFKRFDEDGDGKLSPSELRRCVETIGGGAADGGGAGGGGVDGLRRGWVGGVGGICGVDGERGRREKDGGVERGF* 84
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1383 83 Gene3D - 7 36 - -
Vvi1g1383 83 Pfam EF hand 10 31 IPR002048 GO:0005509
Vvi1g1383 83 SUPERFAMILY EF-hand 7 35 IPR011992 -
Vvi1g1383 83 ProSitePatterns EF-hand calcium-binding domain. 15 27 IPR018247 -
Vvi1g1383 83 ProSiteProfiles EF-hand calcium-binding domain profile. 2 37 IPR002048 GO:0005509
Vvi1g1383 83 SMART efh_1 6 34 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1383 Vvi-Chr1 20016283 20016534 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1383 7 40 EF-hand Containing Proteins AT5G17480 50.000 2.01e-07 42.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1383 K13448 - vvi:100249487 73.9442