Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1381 ATGGGTTGCTGGGATTGGAGGAATTTGTGGGGTGGATGGAGAGGGAGGATGGGTTGGTGGGGTTGGAGGAATTTGTGGGGTGGATGGAGGGAGAGGATGAAGGAGTTTAGAGAGGCCATTGGGATGTACGAGATGGATGGGGGTGGGTGTATTACTCCAAAGAGCTTGAAGAGGATGCTGAGCAGATTGGGGGAGTCAAGAAGTGTGGAGGAGTTTTGA 219 0.5251 MGCWDWRNLWGGWRGRMGWWGWRNLWGGWRERMKEFREAIGMYEMDGGGCITPKSLKRMLSRLGESRSVEEF* 73
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1381 72 Gene3D - 29 72 - -
Vvi1g1381 72 SUPERFAMILY EF-hand 15 71 IPR011992 -
Vvi1g1381 72 ProSiteProfiles EF-hand calcium-binding domain profile. 31 66 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1381 Vvi-Chr1 20007918 20010796 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1381 27 70 EF-hand Containing Proteins AT5G42380 56.818 9.29e-09 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1381 K13448 - vvi:100244321 78.5666